Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACCO40_RS08890 Genome accession   NZ_CP167793
Coordinates   1708454..1709347 (+) Length   297 a.a.
NCBI ID   WP_061187457.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1703454..1714347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS08870 (ACCO40_08870) - 1704126..1705853 (+) 1728 WP_372402710.1 hypothetical protein -
  ACCO40_RS08875 (ACCO40_08875) - 1705850..1706131 (+) 282 WP_014113777.1 FlhB-like flagellar biosynthesis protein -
  ACCO40_RS08880 (ACCO40_08880) sucC 1706305..1707462 (+) 1158 WP_019714397.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCO40_RS08885 (ACCO40_08885) sucD 1707491..1708393 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  ACCO40_RS08890 (ACCO40_08890) dprA 1708454..1709347 (+) 894 WP_061187457.1 DNA-processing protein DprA Machinery gene
  ACCO40_RS08895 (ACCO40_08895) topA 1709534..1711609 (+) 2076 WP_014113782.1 type I DNA topoisomerase -
  ACCO40_RS08900 (ACCO40_08900) trmFO 1711685..1712992 (+) 1308 WP_014113783.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACCO40_RS08905 (ACCO40_08905) xerC 1713060..1713974 (+) 915 WP_014113784.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32940.30 Da        Isoelectric Point: 9.6987

>NTDB_id=1039413 ACCO40_RS08890 WP_061187457.1 1708454..1709347(+) (dprA) [Bacillus spizizenii strain SHT-15]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTRGKIKAAALKNKIEEQYPKLQRVLAAYHEQGINPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQIVNHLTEELCRKNWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1039413 ACCO40_RS08890 WP_061187457.1 1708454..1709347(+) (dprA) [Bacillus spizizenii strain SHT-15]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACGTCACCCGTGTTAGAAACTGTTACTCGAGGTAAAATAAAGGCAGCTGCATTAAAAA
ATAAAATAGAAGAACAATATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGAATTAACCCCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAATTGTCAATCATCTTA
CAGAAGAGCTCTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAACACATATATCCCCGGGAAAACCTTCAGTTAGC
AGATCATATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGTGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGAAGAGAAGTATTTGCCGTACCCGGCTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCTATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.276

100

0.943

Multiple sequence alignment