Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KJP77_RS06440 Genome accession   NZ_OX419554
Coordinates   1230790..1231707 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis isolate NRS6160     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225790..1236707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS06425 (NRS6160_06360) trpS 1226370..1227362 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  KJP77_RS06430 (NRS6160_06365) oppA 1228106..1229743 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  KJP77_RS06435 (NRS6160_06370) oppB 1229851..1230786 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  KJP77_RS06440 (NRS6160_06375) amiD 1230790..1231707 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  KJP77_RS06445 (NRS6160_06380) oppD 1231712..1232788 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  KJP77_RS06450 (NRS6160_06385) oppF 1232790..1233707 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  KJP77_RS06455 (NRS6160_06390) yjbB 1233814..1235031 (+) 1218 WP_088467689.1 MFS transporter -
  KJP77_RS06460 (NRS6160_06395) yjbC 1235195..1235773 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  KJP77_RS06465 (NRS6160_06400) spx 1235954..1236349 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=1038883 KJP77_RS06440 WP_003232954.1 1230790..1231707(+) (amiD) [Bacillus subtilis isolate NRS6160]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=1038883 KJP77_RS06440 WP_003232954.1 1230790..1231707(+) (amiD) [Bacillus subtilis isolate NRS6160]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment