Detailed information NTG1038755

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACBW56_RS05670
• Genome accession: NZ_CP167196
• Coordinates: 1214638..1215417 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain FRI-TD24
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1209638..1220417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACBW56_RS05640 (ACBW56_05640)	fliH	1209682..1210437 (-)	756	WP_015388237.1	flagellar assembly protein FliH	-
ACBW56_RS05645 (ACBW56_05645)	fliG	1210430..1211446 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACBW56_RS05650 (ACBW56_05650)	fliF	1211459..1213069 (-)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACBW56_RS05655 (ACBW56_05655)	fliE	1213112..1213432 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACBW56_RS05660 (ACBW56_05660)	flgC	1213443..1213895 (-)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACBW56_RS05665 (ACBW56_05665)	flgB	1213895..1214284 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACBW56_RS05670 (ACBW56_05670)	codY	1214638..1215417 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACBW56_RS05675 (ACBW56_05675)	hslU	1215455..1216858 (-)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACBW56_RS05680 (ACBW56_05680)	hslV	1216875..1217420 (-)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACBW56_RS05685 (ACBW56_05685)	xerC	1217436..1218353 (-)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACBW56_RS05690 (ACBW56_05690)	trmFO	1218423..1219730 (-)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1038755 ACBW56_RS05670 WP_003154263.1 1214638..1215417(-) (codY) [Bacillus velezensis strain FRI-TD24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1038755 ACBW56_RS05670 WP_003154263.1 1214638..1215417(-) (codY) [Bacillus velezensis strain FRI-TD24]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471