Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACBZ91_RS13725 Genome accession   NZ_CP167179
Coordinates   2918306..2919028 (-) Length   240 a.a.
NCBI ID   WP_372377663.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2913306..2924028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS13700 (ACBZ91_13700) - 2914484..2914975 (+) 492 WP_020335694.1 type II secretion system protein M -
  ACBZ91_RS13705 (ACBZ91_13705) - 2914977..2915738 (+) 762 WP_243975602.1 type II secretion system protein N -
  ACBZ91_RS13710 (ACBZ91_13710) cysQ 2916023..2916850 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACBZ91_RS13715 (ACBZ91_13715) nudE 2916895..2917464 (-) 570 WP_014230545.1 ADP compounds hydrolase NudE -
  ACBZ91_RS13720 (ACBZ91_13720) nfuA 2917625..2918209 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  ACBZ91_RS13725 (ACBZ91_13725) comF 2918306..2919028 (-) 723 WP_372377663.1 ComF family protein Machinery gene
  ACBZ91_RS13730 (ACBZ91_13730) bioH 2919113..2919880 (+) 768 WP_372377665.1 pimeloyl-ACP methyl ester esterase BioH -
  ACBZ91_RS13735 (ACBZ91_13735) - 2919992..2920456 (+) 465 WP_020335700.1 hypothetical protein -
  ACBZ91_RS13740 (ACBZ91_13740) - 2920539..2922869 (-) 2331 WP_372377666.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27610.89 Da        Isoelectric Point: 8.8553

>NTDB_id=1038704 ACBZ91_RS13725 WP_372377663.1 2918306..2919028(-) (comF) [Vibrio natriegens strain JSH01]
MLSHHWQNIMHRVLGSQCGLCRLPLKKAQQPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHIDALTQLLATHIAAPAPIITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYADSQRGYTKTQREQNLQGAFILNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1038704 ACBZ91_RS13725 WP_372377663.1 2918306..2919028(-) (comF) [Vibrio natriegens strain JSH01]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGGTAGTCAATGTGGTCTGTGCAGACTGCCACTGAAAAA
AGCACAACAGCCTAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGATACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAACGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAACGCTTTAAGGATCATGGCGAGAGTTGGCACATCGA
CGCGCTGACTCAGTTGCTTGCCACTCATATTGCAGCCCCTGCTCCAATTATCACCAGCGTTCCACTACACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAGACTCTCAGAGAGGCTATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCATT
TATCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

50.633

98.75

0.5

Multiple sequence alignment