Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QNH71_RS05760 Genome accession   NZ_OX352941
Coordinates   1181656..1182390 (-) Length   244 a.a.
NCBI ID   WP_014637571.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_WT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176656..1187390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS05730 - 1176764..1177591 (-) 828 WP_022540576.1 class C sortase -
  QNH71_RS05735 - 1177559..1177948 (+) 390 Protein_1135 transposase -
  QNH71_RS05740 - 1177949..1178335 (-) 387 WP_024417621.1 hypothetical protein -
  QNH71_RS05745 lepB 1178354..1178956 (-) 603 WP_171840853.1 signal peptidase I -
  QNH71_RS05750 - 1178946..1179239 (-) 294 WP_002938694.1 hypothetical protein -
  QNH71_RS05755 - 1180678..1181526 (-) 849 WP_015646548.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  QNH71_RS05760 amiE 1181656..1182390 (-) 735 WP_014637571.1 amino acid ABC transporter ATP-binding protein Regulator
  QNH71_RS05765 - 1182383..1183072 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  QNH71_RS05770 - 1183198..1183428 (-) 231 WP_002938704.1 DUF1797 family protein -
  QNH71_RS05775 clpE 1183652..1185880 (+) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QNH71_RS05780 - 1186066..1186527 (+) 462 WP_002938708.1 NUDIX hydrolase -
  QNH71_RS05785 - 1186582..1186890 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26908.18 Da        Isoelectric Point: 4.8166

>NTDB_id=1038038 QNH71_RS05760 WP_014637571.1 1181656..1182390(-) (amiE) [Streptococcus suis isolate 861160_WT]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVKFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1038038 QNH71_RS05760 WP_014637571.1 1181656..1182390(-) (amiE) [Streptococcus suis isolate 861160_WT]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTTGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTAAATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGAATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment