Detailed information NTG1036440

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACA346_RS07770
• Genome accession: NZ_CP166970
• Coordinates: 1512222..1513157 (-)
• Length: 311 a.a.
• NCBI ID: WP_274504176.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain NX1
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1507222..1518157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA346_RS07740 (ACA346_07740)	-	1507669..1509239 (+)	1571	WP_418126646.1	IS3 family transposase	-
ACA346_RS07745 (ACA346_07745)	yghU	1509296..1510084 (-)	789	WP_130555256.1	glutathione-dependent disulfide-bond oxidoreductase	-
ACA346_RS07750 (ACA346_07750)	-	1510093..1510383 (-)	291	WP_418126647.1	hypothetical protein	-
ACA346_RS07755 (ACA346_07755)	rplA	1510489..1511178 (-)	690	WP_217374084.1	50S ribosomal protein L1	-
ACA346_RS07760 (ACA346_07760)	rplK	1511219..1511644 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
ACA346_RS07765 (ACA346_07765)	-	1511799..1512167 (+)	369	WP_130555258.1	DUF3397 domain-containing protein	-
ACA346_RS07770 (ACA346_07770)	amiF	1512222..1513157 (-)	936	WP_274504176.1	ABC transporter ATP-binding protein	Regulator
ACA346_RS07775 (ACA346_07775)	oppD	1513154..1514197 (-)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
ACA346_RS07780 (ACA346_07780)	-	1514212..1515243 (-)	1032	WP_217374086.1	ABC transporter permease	-
ACA346_RS07785 (ACA346_07785)	-	1515254..1516168 (-)	915	WP_217374087.1	ABC transporter permease	-
ACA346_RS07790 (ACA346_07790)	-	1516239..1517493 (-)	1255	Protein_1502	peptide ABC transporter substrate-binding protein	-
ACA346_RS07795 (ACA346_07795)	-	1517650..1518036 (-)	387	WP_418126648.1	VOC family protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34983.74 Da
• Isoelectric Point: 6.0122

>NTDB_id=1036440 ACA346_RS07770 WP_274504176.1 1512222..1513157(-) (amiF) [Streptococcus parasuis strain NX1]
MSESRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKGRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=1036440 ACA346_RS07770 WP_274504176.1 1512222..1513157(-) (amiF) [Streptococcus parasuis strain NX1]
ATGAGCGAAAGTAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CAGTTGGCCGTACCATTCTAAAGTTGTATGACTATAATGCTGGCGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACACGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTTTC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGG
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.922	99.035	0.524
amiF	Streptococcus thermophilus LMG 18311	52.597	99.035	0.521
amiF	Streptococcus salivarius strain HSISS4	52.273	99.035	0.518