Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AB5987_RS08305 Genome accession   NZ_CP166896
Coordinates   1661735..1662565 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain XIF24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1656735..1667565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5987_RS08285 - 1657866..1658822 (+) 957 WP_014568802.1 DhaKLM operon coactivator DhaQ -
  AB5987_RS08290 dhaS 1658823..1659347 (-) 525 WP_014568803.1 dihydroxyacetone kinase transcriptional activator DhaS -
  AB5987_RS08295 brnQ 1659493..1660875 (-) 1383 WP_014568804.1 branched-chain amino acid transport system II carrier protein -
  AB5987_RS08300 - 1661414..1661680 (+) 267 WP_003701014.1 hypothetical protein -
  AB5987_RS08305 endA 1661735..1662565 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  AB5987_RS08310 - 1662934..1663536 (+) 603 WP_003701011.1 nitroreductase family protein -
  AB5987_RS08315 - 1663589..1665520 (-) 1932 WP_081539135.1 heavy metal translocating P-type ATPase -
  AB5987_RS08320 - 1665643..1665984 (+) 342 WP_049770569.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=1036037 AB5987_RS08305 WP_003709392.1 1661735..1662565(-) (endA) [Ligilactobacillus salivarius strain XIF24]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=1036037 AB5987_RS08305 WP_003709392.1 1661735..1662565(-) (endA) [Ligilactobacillus salivarius strain XIF24]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAGTTTATGAGATGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAAGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCGTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACTTACCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment