Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KHU1_RS03050 Genome accession   NZ_CP007242
Coordinates   632044..633861 (+) Length   605 a.a.
NCBI ID   WP_042634970.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 627044..638861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS03035 (KHU1_0587) - 627828..628589 (+) 762 WP_007408530.1 MurR/RpiR family transcriptional regulator -
  KHU1_RS03040 (KHU1_0588) - 628606..630192 (+) 1587 WP_042634969.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  KHU1_RS03045 (KHU1_0589) - 630330..632063 (+) 1734 WP_007408532.1 ABC transporter ATP-binding protein -
  KHU1_RS03050 (KHU1_0590) rcrQ 632044..633861 (+) 1818 WP_042634970.1 ABC transporter ATP-binding protein Regulator
  KHU1_RS03055 (KHU1_0591) - 634029..634433 (+) 405 WP_007408534.1 DoxX family protein -
  KHU1_RS03060 (KHU1_0592) - 634450..635307 (+) 858 WP_020955517.1 VOC family protein -
  KHU1_RS03065 (KHU1_0593) cyoE 635673..636620 (+) 948 WP_020955518.1 heme o synthase -
  KHU1_RS03070 (KHU1_0594) - 636658..637209 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  KHU1_RS03075 (KHU1_0595) - 637442..638044 (+) 603 WP_015417051.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67542.29 Da        Isoelectric Point: 9.7083

>NTDB_id=103578 KHU1_RS03050 WP_042634970.1 632044..633861(+) (rcrQ) [Bacillus amyloliquefaciens KHG19]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTISVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMKQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDKEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=103578 KHU1_RS03050 WP_042634970.1 632044..633861(+) (rcrQ) [Bacillus amyloliquefaciens KHG19]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGA
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTGCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCTCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGATTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGAAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATTTCTATCGGTTCTATCGTCGTATTCGCCGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAATCAATCGCCTTTGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACAATCAGGGAGAATATCCGCTACGGCCGGCTGGATGCTTCTGACAAAGAGGTGGAGGAAGCCGCAAAAGCCGCCAAT
GCCCACGGGTTCATCGAACGGCTCCCGAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ACACAGTGACCGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCGGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment