Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABKQ09_RS08645 Genome accession   NZ_CP166870
Coordinates   1700751..1701530 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695751..1706530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS08625 (ABKQ09_08620) trmFO 1696446..1697753 (+) 1308 WP_061670769.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABKQ09_RS08630 (ABKQ09_08625) xerC 1697820..1698734 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  ABKQ09_RS08635 (ABKQ09_08630) clpQ 1698748..1699293 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  ABKQ09_RS08640 (ABKQ09_08635) hslU 1699301..1700713 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  ABKQ09_RS08645 (ABKQ09_08640) codY 1700751..1701530 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABKQ09_RS08650 (ABKQ09_08645) flgB 1701950..1702339 (+) 390 WP_340640593.1 flagellar basal body rod protein FlgB -
  ABKQ09_RS08655 (ABKQ09_08650) flgC 1702339..1702788 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  ABKQ09_RS08660 (ABKQ09_08655) fliE 1702799..1703119 (+) 321 WP_061670772.1 flagellar hook-basal body complex protein FliE -
  ABKQ09_RS08665 (ABKQ09_08660) fliF 1703163..1704770 (+) 1608 WP_268496016.1 flagellar basal-body MS-ring/collar protein FliF -
  ABKQ09_RS08670 (ABKQ09_08665) fliG 1704783..1705799 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=1035751 ABKQ09_RS08645 WP_003328951.1 1700751..1701530(+) (codY) [Bacillus atrophaeus strain F4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1035751 ABKQ09_RS08645 WP_003328951.1 1700751..1701530(+) (codY) [Bacillus atrophaeus strain F4]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTGATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCAATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCGCTCAGAAAGCTGGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment