Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABKQ09_RS08615 Genome accession   NZ_CP166870
Coordinates   1693208..1694107 (+) Length   299 a.a.
NCBI ID   WP_003328957.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1688208..1699107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS08595 (ABKQ09_08590) - 1688859..1690607 (+) 1749 WP_371176517.1 hypothetical protein -
  ABKQ09_RS08600 (ABKQ09_08595) - 1690604..1690885 (+) 282 WP_003328960.1 FlhB-like flagellar biosynthesis protein -
  ABKQ09_RS08605 (ABKQ09_08600) sucC 1691058..1692215 (+) 1158 WP_003328959.1 ADP-forming succinate--CoA ligase subunit beta -
  ABKQ09_RS08610 (ABKQ09_08605) sucD 1692244..1693146 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  ABKQ09_RS08615 (ABKQ09_08610) dprA 1693208..1694107 (+) 900 WP_003328957.1 DNA-processing protein DprA Machinery gene
  ABKQ09_RS08620 (ABKQ09_08615) topA 1694295..1696370 (+) 2076 WP_013390513.1 type I DNA topoisomerase -
  ABKQ09_RS08625 (ABKQ09_08620) trmFO 1696446..1697753 (+) 1308 WP_061670769.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABKQ09_RS08630 (ABKQ09_08625) xerC 1697820..1698734 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33189.24 Da        Isoelectric Point: 9.5634

>NTDB_id=1035750 ABKQ09_RS08615 WP_003328957.1 1693208..1694107(+) (dprA) [Bacillus atrophaeus strain F4]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPSWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1035750 ABKQ09_RS08615 WP_003328957.1 1693208..1694107(+) (dprA) [Bacillus atrophaeus strain F4]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCAC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATACCCGTCATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGAAAAATTGGAGTGGTAGGTACGCGAAACCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCCGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCTGCTGAGGATATTTACAGTGAGTTATCGGAAGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742

Multiple sequence alignment