Detailed information NTG1035524

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB3239_RS08915
• Genome accession: NZ_CP166831
• Coordinates: 1698246..1699025 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain TE3T-UV25
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1693246..1704025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3239_RS08895 (AB3239_08895)	trmFO	1693939..1695246 (+)	1308	WP_153256751.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB3239_RS08900 (AB3239_08900)	xerC	1695314..1696228 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
AB3239_RS08905 (AB3239_08905)	clpQ	1696241..1696786 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
AB3239_RS08910 (AB3239_08910)	hslU	1696803..1698206 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
AB3239_RS08915 (AB3239_08915)	codY	1698246..1699025 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB3239_RS08920 (AB3239_08920)	flgB	1699405..1699794 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
AB3239_RS08925 (AB3239_08925)	flgC	1699794..1700246 (+)	453	WP_021479294.1	flagellar basal body rod protein FlgC	-
AB3239_RS08930 (AB3239_08930)	fliE	1700257..1700577 (+)	321	WP_370957397.1	flagellar hook-basal body complex protein FliE	-
AB3239_RS08935 (AB3239_08935)	fliF	1700623..1702233 (+)	1611	WP_043940114.1	flagellar basal-body MS-ring/collar protein FliF	-
AB3239_RS08940 (AB3239_08940)	fliG	1702246..1703262 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AB3239_RS08945 (AB3239_08945)	fliH	1703255..1704007 (+)	753	WP_032725764.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1035524 AB3239_RS08915 WP_003220850.1 1698246..1699025(+) (codY) [Bacillus subtilis strain TE3T-UV25]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1035524 AB3239_RS08915 WP_003220850.1 1698246..1699025(+) (codY) [Bacillus subtilis strain TE3T-UV25]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATTGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467