Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STAB904_RS07925 Genome accession   NZ_CP007241
Coordinates   1612705..1613973 (+) Length   422 a.a.
NCBI ID   WP_038434293.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607705..1618973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS07895 (STAB904_08830) prmA 1607799..1608752 (-) 954 WP_038434289.1 50S ribosomal protein L11 methyltransferase -
  STAB904_RS07900 (STAB904_08835) - 1608847..1609287 (-) 441 WP_038434290.1 NUDIX hydrolase -
  STAB904_RS07905 (STAB904_08840) - 1609299..1609643 (-) 345 WP_015057241.1 ASCH domain-containing protein -
  STAB904_RS07910 (STAB904_08845) - 1609645..1610115 (-) 471 WP_038434291.1 DUF3013 family protein -
  STAB904_RS07915 (STAB904_08850) pabB 1610316..1612073 (+) 1758 WP_038434367.1 aminodeoxychorismate synthase component I -
  STAB904_RS07920 (STAB904_08855) - 1612106..1612672 (+) 567 WP_038434292.1 aminodeoxychorismate/anthranilate synthase component II -
  STAB904_RS07925 (STAB904_08860) rarA 1612705..1613973 (+) 1269 WP_038434293.1 replication-associated recombination protein A Machinery gene
  STAB904_RS07935 (STAB904_08875) - 1614431..1615458 (-) 1028 Protein_1514 site-specific integrase -
  STAB904_RS07940 (STAB904_08885) - 1615581..1616747 (-) 1167 WP_038434294.1 helix-turn-helix domain-containing protein -
  STAB904_RS07945 (STAB904_08890) - 1616768..1617475 (-) 708 WP_038434295.1 hypothetical protein -
  STAB904_RS09140 - 1617705..1617923 (-) 219 Protein_1517 hypothetical protein -
  STAB904_RS09490 (STAB904_08895) - 1618260..1618499 (-) 240 WP_038434296.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3771

>NTDB_id=103545 STAB904_RS07925 WP_038434293.1 1612705..1613973(+) (rarA) [Streptococcus pyogenes strain 1E1]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELDPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=103545 STAB904_RS07925 WP_038434293.1 1612705..1613973(+) (rarA) [Streptococcus pyogenes strain 1E1]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGATCCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTGCTATCAGCCCTCCAAAAAGCTATTCGCGGCTCCGATGTCAATGCCAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCTCCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.233

98.815

0.585

Multiple sequence alignment