Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OAM_RS01490 Genome accession   NZ_CP166824
Coordinates   310815..311528 (-) Length   237 a.a.
NCBI ID   WP_016791235.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305815..316528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAM_RS01465 (OAM_001465) - 307028..307516 (+) 489 WP_016768269.1 type II secretion system protein M -
  OAM_RS01470 (OAM_001470) - 307518..308297 (+) 780 WP_010433596.1 type II secretion system protein N -
  OAM_RS01475 (OAM_001475) cysQ 308422..309249 (-) 828 WP_010433599.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OAM_RS01480 (OAM_001480) nudE 309286..309837 (-) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  OAM_RS01485 (OAM_001485) nfuA 310120..310704 (-) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  OAM_RS01490 (OAM_001490) comF 310815..311528 (-) 714 WP_016791235.1 ComF family protein Machinery gene
  OAM_RS01495 (OAM_001495) bioH 311622..312398 (+) 777 WP_010433610.1 pimeloyl-ACP methyl ester esterase BioH -
  OAM_RS01500 (OAM_001500) - 312754..313227 (+) 474 WP_010433611.1 hypothetical protein -
  OAM_RS01505 (OAM_001505) - 313352..315682 (-) 2331 WP_010433612.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27278.29 Da        Isoelectric Point: 8.4325

>NTDB_id=1035428 OAM_RS01490 WP_016791235.1 310815..311528(-) (comF) [Vibrio cyclitrophicus ZF14]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYIHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STDSQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1035428 OAM_RS01490 WP_016791235.1 310815..311528(-) (comF) [Vibrio cyclitrophicus ZF14]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCGTCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACATTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAACTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGC
TCAACAGATTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AGTTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502

Multiple sequence alignment