Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DYY95_RS01015 Genome accession   NZ_LT996891
Coordinates   204524..205297 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 24117-WT     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 199524..210297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY95_RS00980 - 199777..200547 (-) 771 WP_000473699.1 isoprenyl transferase -
  DYY95_RS00985 frr 200920..201474 (-) 555 WP_001280006.1 ribosome recycling factor -
  DYY95_RS00990 pyrH 201493..202215 (-) 723 WP_000057330.1 UMP kinase -
  DYY95_RS00995 tsf 202352..203233 (-) 882 WP_000201387.1 translation elongation factor Ts -
  DYY95_RS01000 - 203268..203381 (-) 114 WP_001789890.1 hypothetical protein -
  DYY95_RS01005 rpsB 203415..204182 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  DYY95_RS01010 - 204381..204473 (-) 93 WP_031788481.1 hypothetical protein -
  DYY95_RS01015 codY 204524..205297 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DYY95_RS01020 hslU 205322..206725 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DYY95_RS01025 hslV 206791..207336 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DYY95_RS01030 xerC 207333..208229 (-) 897 WP_001015602.1 tyrosine recombinase XerC -
  DYY95_RS01035 trmFO 208646..209953 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1035205 DYY95_RS01015 WP_000055337.1 204524..205297(-) (codY) [Staphylococcus aureus isolate 24117-WT]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1035205 DYY95_RS01015 WP_000055337.1 204524..205297(-) (codY) [Staphylococcus aureus isolate 24117-WT]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428