Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QUF19_RS00625 Genome accession   NZ_AP028067
Coordinates   138733..139446 (-) Length   237 a.a.
NCBI ID   WP_353505919.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133733..144446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS00600 - 134840..135328 (+) 489 WP_286295342.1 type II secretion system protein M -
  QUF19_RS00605 - 135330..136109 (+) 780 WP_286295343.1 type II secretion system protein N -
  QUF19_RS00610 cysQ 136308..137135 (-) 828 WP_102437898.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QUF19_RS00615 nudE 137172..137723 (-) 552 WP_286295345.1 ADP compounds hydrolase NudE -
  QUF19_RS00620 nfuA 138039..138623 (-) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  QUF19_RS00625 comF 138733..139446 (-) 714 WP_353505919.1 ComF family protein Machinery gene
  QUF19_RS00630 bioH 139540..140316 (+) 777 WP_286295347.1 pimeloyl-ACP methyl ester esterase BioH -
  QUF19_RS00635 - 140492..140965 (+) 474 WP_017107878.1 hypothetical protein -
  QUF19_RS00640 - 141216..143546 (-) 2331 WP_286295348.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27374.58 Da        Isoelectric Point: 8.4896

>NTDB_id=103502 QUF19_RS00625 WP_353505919.1 138733..139446(-) (comF) [Vibrio sp. FE10]
MLSDWLQKHTPRLVIPQCHLCKLDKSPHDAHPRWCHDCLNLFEPVPRCQRCGLKTLTTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYSDKFWFARDLSKLLASRIDHPAPLITSVPLHWTRYIQRSFNQSQLLANYTAQELGVKSDVLFRRNR
ATLSQQGLTKSIRLSNLNGAFTFLHRDFEATDYPHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=103502 QUF19_RS00625 WP_353505919.1 138733..139446(-) (comF) [Vibrio sp. FE10]
ATGTTATCTGATTGGCTACAAAAACACACACCACGGCTGGTCATACCTCAATGTCACCTATGTAAATTGGATAAATCCCC
CCATGATGCTCATCCGCGATGGTGTCATGATTGTCTTAATCTCTTCGAGCCAGTACCGCGCTGCCAGCGGTGTGGCTTAA
AAACCCTCACTACCGTCGAACAATGTGGTCAGTGCCTATCTCAACCTCCGCCATGGCATCGTCTCTATTGCGTGGGCGAT
TACACCTTCCCAACCGCGCGCTATATTCAGCAGATGAAGTATTCCGATAAGTTTTGGTTTGCTCGCGATCTGTCTAAGTT
ACTAGCCTCACGCATTGACCATCCAGCCCCGCTGATTACCAGTGTCCCTTTACATTGGACTCGATACATTCAACGCAGCT
TTAACCAAAGCCAGTTATTGGCAAACTATACCGCTCAAGAATTAGGGGTGAAAAGTGATGTATTGTTTCGGCGAAATCGC
GCCACGCTTTCTCAACAAGGGTTAACCAAGTCTATAAGGTTGAGTAACCTGAATGGTGCTTTCACGTTTCTTCATCGCGA
CTTTGAAGCGACTGATTATCCTCACATTGCAATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.649

100

0.561
  comF Vibrio campbellii strain DS40M4

47.951

100

0.494

Multiple sequence alignment