Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HUW69_RS08405 Genome accession   NZ_LT992490
Coordinates   1877165..1878514 (-) Length   449 a.a.
NCBI ID   WP_000073970.1    Uniprot ID   A0A366ASC8
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872165..1883514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS08390 (SAMEA4374365_01707) bioB 1873181..1874233 (-) 1053 WP_000453785.1 biotin synthase BioB -
  HUW69_RS08395 (SAMEA4374365_01708) bioA 1874366..1875646 (+) 1281 WP_174566523.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  HUW69_RS08400 (SAMEA4374365_01709) serS 1875754..1877061 (-) 1308 WP_000887349.1 serine--tRNA ligase -
  HUW69_RS08405 (SAMEA4374365_01710) rarA 1877165..1878514 (-) 1350 WP_000073970.1 replication-associated recombination protein A Machinery gene
  HUW69_RS08410 (SAMEA4374365_01711) lolA 1878539..1879135 (-) 597 WP_001045820.1 outer membrane lipoprotein chaperone LolA -
  HUW69_RS08415 (SAMEA4374365_01712) - 1879231..1879851 (-) 621 WP_057644273.1 YecA family protein -
  HUW69_RS08420 (SAMEA4374365_01713) dusC 1880017..1880988 (+) 972 WP_002031852.1 tRNA dihydrouridine(16) synthase DusC -
  HUW69_RS08425 (SAMEA4374365_01714) - 1881021..1882490 (-) 1470 WP_113594438.1 sensor domain-containing diguanylate cyclase -
  HUW69_RS08430 (SAMEA4374365_01715) - 1882658..1883452 (-) 795 WP_000620368.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49799.30 Da        Isoelectric Point: 6.0310

>NTDB_id=1034893 HUW69_RS08405 WP_000073970.1 1877165..1878514(-) (rarA) [Vibrio cholerae strain 4295STDY6534200]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNPQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1034893 HUW69_RS08405 WP_000073970.1 1877165..1878514(-) (rarA) [Vibrio cholerae strain 4295STDY6534200]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCCCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGACCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACAGGAAAAACCACGTTAGCCGAAGTGGCAGCCAACTACGCCAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
CCGTACGATTTTGTTTGTCGACGAAGTCCATCGTTTTAATAAATCGCAGCAAGATGCATTTTTGCCGCACATCGAAGATG
GCACAGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTTACCTCGCTCAATCCACAAGAAATTCTGCAAGCCCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAACGTGTTGGATCGCTTAGCAGAGCTGGTCAATGGCGATGCGCGCATGTCACTCA
ACTATCTTGAGCTGCTGTATGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCCGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAATCGAT
TCGAGGTTCCGATCCCGATGCGGCACTGTACTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCGCGGGGCATGCAAGTGGCGCTTTCTGCTTGGGAT
TGCTTTACCCGTGTCGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTTTATTTGGCGTGCGCGCCGAAAAG
CAATGCGGTGTATACCGCGTGGAAGCAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTACCGCCGCATCTGC
GTAATGCTCCAACGCGATTGATGAAAGATCTCGGTTATGGCGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(192-268)

ATPase family associated with various cellular activities (AAA) (AAA)

(54-159)

MgsA AAA+ ATPase C terminal (MgsA_C)

(269-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366ASC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.756

91.314

0.363