Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACAF46_RS11470 Genome accession   NZ_CP166499
Coordinates   2493507..2495378 (-) Length   623 a.a.
NCBI ID   WP_370610571.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain JNU311     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2451486..2506840 2493507..2495378 within 0


Gene organization within MGE regions


Location: 2451486..2506840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAF46_RS11300 (ACAF46_11295) - 2451486..2452181 (+) 696 WP_370610558.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  ACAF46_RS11305 (ACAF46_11300) - 2452220..2453095 (+) 876 WP_065474737.1 AraC family transcriptional regulator -
  ACAF46_RS11310 (ACAF46_11305) - 2453236..2453502 (-) 267 WP_370610559.1 hypothetical protein -
  ACAF46_RS11315 (ACAF46_11310) - 2454117..2455187 (+) 1071 WP_370610560.1 Fic family protein -
  ACAF46_RS11320 (ACAF46_11315) - 2455213..2457021 (-) 1809 WP_370610561.1 ABC transporter ATP-binding protein -
  ACAF46_RS11325 (ACAF46_11320) - 2457032..2458933 (-) 1902 WP_370610562.1 ABC transporter ATP-binding protein -
  ACAF46_RS11330 (ACAF46_11325) - 2459375..2460772 (+) 1398 WP_209153248.1 ATP-binding protein -
  ACAF46_RS11335 (ACAF46_11330) - 2460942..2461214 (-) 273 WP_013141438.1 AAA family ATPase -
  ACAF46_RS11340 (ACAF46_11335) - 2461635..2462615 (-) 981 WP_370610563.1 family 43 glycosylhydrolase -
  ACAF46_RS11345 (ACAF46_11340) - 2462736..2463611 (-) 876 WP_012578633.1 carbohydrate ABC transporter permease -
  ACAF46_RS11350 (ACAF46_11345) - 2463615..2464574 (-) 960 WP_013141440.1 carbohydrate ABC transporter permease -
  ACAF46_RS11355 (ACAF46_11350) - 2464737..2465984 (-) 1248 WP_013141441.1 ABC transporter substrate-binding protein -
  ACAF46_RS11360 (ACAF46_11355) - 2466261..2467307 (-) 1047 WP_065435644.1 LacI family DNA-binding transcriptional regulator -
  ACAF46_RS11365 (ACAF46_11360) - 2467595..2469697 (+) 2103 WP_370610564.1 beta-galactosidase -
  ACAF46_RS11370 (ACAF46_11365) - 2469772..2470377 (-) 606 WP_370611383.1 DUF4143 domain-containing protein -
  ACAF46_RS11375 (ACAF46_11370) - 2470449..2471681 (+) 1233 WP_226560172.1 ISL3 family transposase -
  ACAF46_RS11380 (ACAF46_11375) - 2472081..2472482 (-) 402 Protein_2210 AAA family ATPase -
  ACAF46_RS11385 (ACAF46_11380) - 2472802..2473425 (+) 624 WP_370610565.1 MFS transporter -
  ACAF46_RS11390 (ACAF46_11385) - 2473795..2475528 (-) 1734 WP_060620249.1 ABC transporter family substrate-binding protein -
  ACAF46_RS11395 (ACAF46_11390) - 2475560..2477629 (-) 2070 WP_370611384.1 dipeptide ABC transporter ATP-binding protein -
  ACAF46_RS11400 (ACAF46_11395) - 2477716..2478666 (-) 951 WP_223616881.1 ABC transporter permease -
  ACAF46_RS11405 (ACAF46_11400) - 2478739..2479722 (-) 984 WP_071477623.1 ABC transporter permease -
  ACAF46_RS11410 (ACAF46_11405) - 2480016..2481536 (+) 1521 WP_370610566.1 C1 family peptidase -
  ACAF46_RS11415 (ACAF46_11410) - 2481649..2482209 (+) 561 WP_041473894.1 IS3 family transposase -
  ACAF46_RS11420 (ACAF46_11415) - 2482170..2483015 (+) 846 WP_080558530.1 IS3 family transposase -
  ACAF46_RS11425 (ACAF46_11420) - 2483295..2484380 (+) 1086 WP_370610567.1 hypothetical protein -
  ACAF46_RS11430 (ACAF46_11425) - 2484843..2485139 (-) 297 WP_071477620.1 hypothetical protein -
  ACAF46_RS11435 (ACAF46_11430) metG 2485559..2487424 (-) 1866 WP_370610568.1 methionine--tRNA ligase -
  ACAF46_RS11440 (ACAF46_11435) - 2487743..2488390 (+) 648 WP_032743824.1 hypothetical protein -
  ACAF46_RS11445 (ACAF46_11440) - 2488381..2488758 (+) 378 WP_065435650.1 hypothetical protein -
  ACAF46_RS11450 (ACAF46_11445) rsmI 2488785..2489795 (-) 1011 WP_032743823.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACAF46_RS11460 (ACAF46_11455) - 2490359..2491456 (+) 1098 WP_370610569.1 FAD:protein FMN transferase -
  ACAF46_RS11465 (ACAF46_11460) rcrQ 2491600..2493438 (-) 1839 WP_370610570.1 ABC transporter ATP-binding protein Regulator
  ACAF46_RS11470 (ACAF46_11465) rcrP 2493507..2495378 (-) 1872 WP_370610571.1 ABC transporter ATP-binding protein Regulator
  ACAF46_RS11475 (ACAF46_11470) - 2495613..2496143 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAF46_RS11480 (ACAF46_11475) - 2496288..2497811 (-) 1524 WP_065474707.1 amino acid permease -
  ACAF46_RS11485 (ACAF46_11480) - 2497999..2501706 (-) 3708 WP_370610572.1 FtsX-like permease family protein -
  ACAF46_RS11490 (ACAF46_11485) - 2501795..2502496 (-) 702 WP_012578658.1 ABC transporter ATP-binding protein -
  ACAF46_RS11495 (ACAF46_11490) - 2502743..2504224 (+) 1482 WP_370610573.1 amino acid permease -
  ACAF46_RS11500 (ACAF46_11495) - 2504309..2504944 (-) 636 WP_370610574.1 YesL family protein -
  ACAF46_RS11505 (ACAF46_11500) - 2505144..2505986 (-) 843 WP_012578661.1 carbohydrate ABC transporter permease -
  ACAF46_RS11510 (ACAF46_11505) - 2505986..2506840 (-) 855 WP_012578662.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68043.56 Da        Isoelectric Point: 5.4498

>NTDB_id=1034813 ACAF46_RS11470 WP_370610571.1 2493507..2495378(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JNU311]
MFRIMKYLSKSEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMTDSSTASGRKHETALLAADKAAQDAGLPA
ERMERVKAAADVAQASEFVARMDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=1034813 ACAF46_RS11470 WP_370610571.1 2493507..2495378(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JNU311]
ATGTTCCGCATCATGAAATACCTCTCCAAATCGGAGATCGGTCAGATGCTCGTCGCCCTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCATCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCATCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGTGCCTACAATGCCGAGG
ACTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGTCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGCTTCACCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAATCGTCGCTGATCAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGATCCGGCGGAGGTCGAGATGACGGACA
GCTCCACCGCCTCCGGCCGCAAGCACGAGACCGCACTGCTCGCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCATGGATGGCGGATATGC
CGCCGCGATCGCACAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGTGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCTACCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.499

100

0.493

Multiple sequence alignment