Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACAF46_RS11470 Genome accession   NZ_CP166499
Coordinates   2493507..2495378 (-) Length   623 a.a.
NCBI ID   WP_370610571.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain JNU311     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488507..2500378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAF46_RS11450 (ACAF46_11445) rsmI 2488785..2489795 (-) 1011 WP_032743823.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACAF46_RS11460 (ACAF46_11455) - 2490359..2491456 (+) 1098 WP_370610569.1 FAD:protein FMN transferase -
  ACAF46_RS11465 (ACAF46_11460) rcrQ 2491600..2493438 (-) 1839 WP_370610570.1 ABC transporter ATP-binding protein Regulator
  ACAF46_RS11470 (ACAF46_11465) rcrP 2493507..2495378 (-) 1872 WP_370610571.1 ABC transporter ATP-binding protein Regulator
  ACAF46_RS11475 (ACAF46_11470) - 2495613..2496143 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAF46_RS11480 (ACAF46_11475) - 2496288..2497811 (-) 1524 WP_065474707.1 amino acid permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68043.56 Da        Isoelectric Point: 5.4498

>NTDB_id=1034813 ACAF46_RS11470 WP_370610571.1 2493507..2495378(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JNU311]
MFRIMKYLSKSEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMTDSSTASGRKHETALLAADKAAQDAGLPA
ERMERVKAAADVAQASEFVARMDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=1034813 ACAF46_RS11470 WP_370610571.1 2493507..2495378(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JNU311]
ATGTTCCGCATCATGAAATACCTCTCCAAATCGGAGATCGGTCAGATGCTCGTCGCCCTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCATCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCATCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGTGCCTACAATGCCGAGG
ACTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGTCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGCTTCACCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAATCGTCGCTGATCAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGATCCGGCGGAGGTCGAGATGACGGACA
GCTCCACCGCCTCCGGCCGCAAGCACGAGACCGCACTGCTCGCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCATGGATGGCGGATATGC
CGCCGCGATCGCACAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGTGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCTACCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(54-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.499

100

0.493

Multiple sequence alignment