Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB6K15_RS02130 Genome accession   NZ_CP166492
Coordinates   523611..524390 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BC248L1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 518611..529390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS02100 (AB6K15_02100) fliH 518655..519410 (-) 756 WP_015239852.1 flagellar assembly protein FliH -
  AB6K15_RS02105 (AB6K15_02105) fliG 519403..520419 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AB6K15_RS02110 (AB6K15_02110) fliF 520432..522042 (-) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  AB6K15_RS02115 (AB6K15_02115) fliE 522085..522405 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AB6K15_RS02120 (AB6K15_02120) flgC 522416..522868 (-) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  AB6K15_RS02125 (AB6K15_02125) flgB 522868..523257 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AB6K15_RS02130 (AB6K15_02130) codY 523611..524390 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB6K15_RS02135 (AB6K15_02135) hslU 524428..525831 (-) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  AB6K15_RS02140 (AB6K15_02140) hslV 525848..526393 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  AB6K15_RS02145 (AB6K15_02145) xerC 526409..527326 (-) 918 WP_032871470.1 tyrosine recombinase XerC -
  AB6K15_RS02150 (AB6K15_02150) trmFO 527396..528703 (-) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1034711 AB6K15_RS02130 WP_003154263.1 523611..524390(-) (codY) [Bacillus velezensis strain BC248L1-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1034711 AB6K15_RS02130 WP_003154263.1 523611..524390(-) (codY) [Bacillus velezensis strain BC248L1-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment