Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB6911_RS08700 Genome accession   NZ_CP166481
Coordinates   1694957..1695736 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689957..1700736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS08680 (AB6911_08655) trmFO 1690652..1691959 (+) 1308 WP_003328955.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB6911_RS08685 (AB6911_08660) xerC 1692026..1692940 (+) 915 WP_003328954.1 tyrosine recombinase XerC -
  AB6911_RS08690 (AB6911_08665) clpQ 1692954..1693499 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  AB6911_RS08695 (AB6911_08670) hslU 1693507..1694919 (+) 1413 WP_266142758.1 HslU--HslV peptidase ATPase subunit -
  AB6911_RS08700 (AB6911_08675) codY 1694957..1695736 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB6911_RS08705 (AB6911_08680) flgB 1696157..1696546 (+) 390 WP_003328950.1 flagellar basal body rod protein FlgB -
  AB6911_RS08710 (AB6911_08685) flgC 1696546..1696995 (+) 450 WP_003328949.1 flagellar basal body rod protein FlgC -
  AB6911_RS08715 (AB6911_08690) fliE 1697006..1697326 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  AB6911_RS08720 (AB6911_08695) fliF 1697370..1698977 (+) 1608 WP_003328947.1 flagellar basal-body MS-ring/collar protein FliF -
  AB6911_RS08725 (AB6911_08700) fliG 1698990..1700006 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=1034664 AB6911_RS08700 WP_003328951.1 1694957..1695736(+) (codY) [Bacillus atrophaeus strain globigii]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1034664 AB6911_RS08700 WP_003328951.1 1694957..1695736(+) (codY) [Bacillus atrophaeus strain globigii]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTGATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCAATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCGCTCAGAAAGCTGGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment