Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB6911_RS08670 Genome accession   NZ_CP166481
Coordinates   1687413..1688312 (+) Length   299 a.a.
NCBI ID   WP_003328957.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1682413..1693312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS08650 (AB6911_08625) - 1683064..1684812 (+) 1749 WP_003328961.1 hypothetical protein -
  AB6911_RS08655 (AB6911_08630) - 1684809..1685090 (+) 282 WP_003328960.1 FlhB-like flagellar biosynthesis protein -
  AB6911_RS08660 (AB6911_08635) sucC 1685263..1686420 (+) 1158 WP_003328959.1 ADP-forming succinate--CoA ligase subunit beta -
  AB6911_RS08665 (AB6911_08640) sucD 1686449..1687351 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  AB6911_RS08670 (AB6911_08645) dprA 1687413..1688312 (+) 900 WP_003328957.1 DNA-processing protein DprA Machinery gene
  AB6911_RS08675 (AB6911_08650) topA 1688501..1690576 (+) 2076 WP_013390513.1 type I DNA topoisomerase -
  AB6911_RS08680 (AB6911_08655) trmFO 1690652..1691959 (+) 1308 WP_003328955.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB6911_RS08685 (AB6911_08660) xerC 1692026..1692940 (+) 915 WP_003328954.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33189.24 Da        Isoelectric Point: 9.5634

>NTDB_id=1034663 AB6911_RS08670 WP_003328957.1 1687413..1688312(+) (dprA) [Bacillus atrophaeus strain globigii]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPSWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1034663 AB6911_RS08670 WP_003328957.1 1687413..1688312(+) (dprA) [Bacillus atrophaeus strain globigii]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCAC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATACCCGTCATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTCATAAAAGGCAGGAAAATTGGAGTGGTAGGTACGCGAAACCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAATCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCACCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCCGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCTGCTGAGGATATTTACAGTGAGTTATCGGAAGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742

Multiple sequence alignment