Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABK042_RS20675 Genome accession   NZ_CP166454
Coordinates   4446534..4447592 (+) Length   352 a.a.
NCBI ID   WP_049453330.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 1945B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4441534..4452592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK042_RS20660 (ABK042_20650) - 4441998..4442741 (+) 744 WP_049453335.1 hypothetical protein -
  ABK042_RS20665 (ABK042_20655) - 4442918..4443562 (-) 645 WP_006466035.1 hypothetical protein -
  ABK042_RS20670 (ABK042_20660) - 4443891..4446314 (-) 2424 WP_049453332.1 penicillin-binding protein 1A -
  ABK042_RS20675 (ABK042_20665) pilM 4446534..4447592 (+) 1059 WP_049453330.1 pilus assembly protein PilM Machinery gene
  ABK042_RS20680 (ABK042_20670) - 4447592..4448470 (+) 879 WP_049453328.1 PilN domain-containing protein -
  ABK042_RS20685 (ABK042_20675) - 4448467..4449123 (+) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  ABK042_RS20690 (ABK042_20680) - 4449150..4449653 (+) 504 WP_044571441.1 pilus assembly protein PilP -
  ABK042_RS20695 (ABK042_20685) - 4449675..4451642 (+) 1968 WP_005410855.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37783.43 Da        Isoelectric Point: 4.4089

>NTDB_id=1034555 ABK042_RS20675 WP_049453330.1 4446534..4447592(+) (pilM) [Stenotrophomonas maltophilia strain 1945B]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYTVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1034555 ABK042_RS20675 WP_049453330.1 4446534..4447592(+) (pilM) [Stenotrophomonas maltophilia strain 1945B]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACACCGTGGAACCTCTTCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCATTGGAGCTGGGG
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCGTTCGCGGTCGAGAACGCCTATGCCCTGGTGGCCAGCGAGCTGCCGGT
GTCCATCGAGGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCTACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGTGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAATCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment