Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXE57_RS09050 Genome accession   NZ_LT992476
Coordinates   1765044..1765817 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 21_LA_436     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760044..1770817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE57_RS09015 - 1760297..1761067 (-) 771 WP_000473705.1 isoprenyl transferase -
  DXE57_RS09020 frr 1761440..1761994 (-) 555 WP_001280006.1 ribosome recycling factor -
  DXE57_RS09025 pyrH 1762013..1762735 (-) 723 WP_000057330.1 UMP kinase -
  DXE57_RS09030 tsf 1762872..1763753 (-) 882 WP_000201387.1 translation elongation factor Ts -
  DXE57_RS09035 - 1763788..1763901 (-) 114 WP_001789890.1 hypothetical protein -
  DXE57_RS09040 rpsB 1763935..1764702 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  DXE57_RS09045 - 1764901..1764993 (-) 93 WP_001790530.1 hypothetical protein -
  DXE57_RS09050 codY 1765044..1765817 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXE57_RS09055 hslU 1765842..1767245 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DXE57_RS09060 hslV 1767311..1767856 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DXE57_RS09065 xerC 1767853..1768749 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  DXE57_RS09070 trmFO 1769166..1770473 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1034555 DXE57_RS09050 WP_000055337.1 1765044..1765817(-) (codY) [Staphylococcus aureus isolate 21_LA_436]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1034555 DXE57_RS09050 WP_000055337.1 1765044..1765817(-) (codY) [Staphylococcus aureus isolate 21_LA_436]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment