Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXE66_RS09665 Genome accession   NZ_LT992474
Coordinates   1888925..1889698 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 19_LA_388     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883925..1894698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE66_RS09645 trmFO 1884269..1885576 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DXE66_RS09650 xerC 1885993..1886889 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  DXE66_RS09655 hslV 1886886..1887431 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DXE66_RS09660 hslU 1887497..1888900 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DXE66_RS09665 codY 1888925..1889698 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXE66_RS09670 - 1889749..1889841 (+) 93 WP_001790530.1 hypothetical protein -
  DXE66_RS09675 rpsB 1890040..1890807 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  DXE66_RS09680 - 1890841..1890954 (+) 114 WP_001789890.1 hypothetical protein -
  DXE66_RS09685 tsf 1890989..1891870 (+) 882 WP_000201387.1 translation elongation factor Ts -
  DXE66_RS09690 pyrH 1892007..1892729 (+) 723 WP_000057330.1 UMP kinase -
  DXE66_RS09695 frr 1892748..1893302 (+) 555 WP_001280006.1 ribosome recycling factor -
  DXE66_RS09700 - 1893675..1894445 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1034367 DXE66_RS09665 WP_000055337.1 1888925..1889698(+) (codY) [Staphylococcus aureus isolate 19_LA_388]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1034367 DXE66_RS09665 WP_000055337.1 1888925..1889698(+) (codY) [Staphylococcus aureus isolate 19_LA_388]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428