Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXE46_RS07210 Genome accession   NZ_LT992471
Coordinates   1386926..1387699 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 17_LA_343     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381926..1392699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE46_RS07190 trmFO 1382270..1383577 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DXE46_RS07195 xerC 1383994..1384890 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  DXE46_RS07200 hslV 1384887..1385432 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DXE46_RS07205 hslU 1385498..1386901 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DXE46_RS07210 codY 1386926..1387699 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXE46_RS07215 - 1387750..1387842 (+) 93 WP_001790530.1 hypothetical protein -
  DXE46_RS07220 rpsB 1388041..1388808 (+) 768 WP_031910408.1 30S ribosomal protein S2 -
  DXE46_RS07225 - 1388842..1388955 (+) 114 WP_001789890.1 hypothetical protein -
  DXE46_RS07230 tsf 1388990..1389871 (+) 882 WP_000201387.1 translation elongation factor Ts -
  DXE46_RS07235 pyrH 1390008..1390730 (+) 723 WP_000057330.1 UMP kinase -
  DXE46_RS07240 frr 1390749..1391303 (+) 555 WP_001280006.1 ribosome recycling factor -
  DXE46_RS07245 - 1391676..1392446 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1034099 DXE46_RS07210 WP_000055337.1 1386926..1387699(+) (codY) [Staphylococcus aureus isolate 17_LA_343]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1034099 DXE46_RS07210 WP_000055337.1 1386926..1387699(+) (codY) [Staphylococcus aureus isolate 17_LA_343]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428