Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SD311_RS07655 Genome accession   NZ_CP166245
Coordinates   1619560..1621947 (-) Length   795 a.a.
NCBI ID   WP_318754904.1    Uniprot ID   -
Organism   Staphylococcus sp. KG4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1614560..1626947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD311_RS07635 (SD311_007635) - 1615477..1615803 (-) 327 WP_017724645.1 DUF1292 domain-containing protein -
  SD311_RS07640 (SD311_007640) ruvX 1615820..1616248 (-) 429 WP_017724646.1 Holliday junction resolvase RuvX -
  SD311_RS07645 (SD311_007645) - 1616252..1616512 (-) 261 WP_017724647.1 IreB family regulatory phosphoprotein -
  SD311_RS07650 (SD311_007650) alaS 1616581..1619211 (-) 2631 WP_017724648.1 alanine--tRNA ligase -
  SD311_RS07655 (SD311_007655) recD2 1619560..1621947 (-) 2388 WP_318754904.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SD311_RS07660 (SD311_007660) - 1621951..1622616 (-) 666 WP_017724650.1 tetratricopeptide repeat protein -
  SD311_RS07665 (SD311_007665) mnmA 1622752..1623864 (-) 1113 WP_017724651.1 tRNA 2-thiouridine(34) synthase MnmA -
  SD311_RS07670 (SD311_007670) - 1623865..1625010 (-) 1146 WP_119604048.1 cysteine desulfurase family protein -
  SD311_RS07675 (SD311_007675) sal 1625071..1626702 (-) 1632 WP_119604049.1 Sal family ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89634.16 Da        Isoelectric Point: 4.5084

>NTDB_id=1033957 SD311_RS07655 WP_318754904.1 1619560..1621947(-) (recD2) [Staphylococcus sp. KG4-3]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDSERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPAELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTYTNKLKEIE
QSDLLLEIGEIEDRNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKMIPRVNLTEVYRQQDGSSIIELAHRMKLGEKIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCVFLKAYFNNDEETESADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1033957 SD311_RS07655 WP_318754904.1 1619560..1621947(-) (recD2) [Staphylococcus sp. KG4-3]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGACGCGATTTTGTTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAACGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCTGAAGGTGACGTTTATACATTTAAAGGCCAAGTAGTTACGCATGCGAAATATGGGAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACAAAAGAAGCAATTATAAGTTATTTATCCAGTGACCTTTTTAAAGGAATAGGTAA
AAAAACAGCACAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTGTATTAGAAA
AAGTACCTAGCTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATTGCAAGTAATCAAGAAACAGAACAAATTATT
ATTCGTCTTCATGATTTAGGTTTTGGGCCAAAGCTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTCAATGT
AGTTGAAAACAAGCCTTATCAACTTGTATATGACGTCAAAGGTATCGGCTTTAATAAGGCGGACACTTTAGCACGTAATG
TAGGCATTCAATTTAATGATTCAGAACGTCTTAAAGCAGGTTTACTTTACGTGCTAGAAGAAGAATGCATAAAACAAGGC
CATACATATTTACCAACTAATAATGTACTAGAGATGACTCAAGATATGTTATCACAACCGCCAGCTGAATTAATAGAAAC
ACAGCAACTTGAGCAAGTTTTACAGGATTTAGTAAATGACACTAAATTAATCCAGCAAGAAAATGAAGTCGCTATTCCAA
GTCTGTATTACTCAGAACTGAAAAGCGTACAAAATTTATACCGTAATTTTACTTATACAAACAAACTTAAAGAAATAGAG
CAATCTGATTTACTGCTTGAAATCGGTGAAATTGAAGATCGCAATAAAGTGACTTATGCAGATTCGCAAAGAGAAGCCTT
ACAAACAGCGATTAACTCTAAAATAATGTTGCTGACAGGTGGTCCAGGTACAGGAAAAACTACTGTTATTAAAGGAATTG
TTGAACTGTATGCAGAGTTGCATGGTTTATCCTTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTTTAGGC
GCGCCAACCGGAAGAGCATCGAAGCGTTTATCAGAGTCAACTGGTTTGGAGGCTATGACGATACATCGTCTAATAGGTTG
GAATCAAGATACGCAACCAGAAGATATATTAGATAATGAAATTTCTGCAAAACTTATCATAATTGATGAAATGTCAATGG
TTGATACATGGTTATTTCATCAATTTTTAAGTGCTGTACCTATCGATGCGCAAGTTATACTAGTCGGGGATGAGGATCAA
TTGCCATCTGTTGGACCTGGTCAAGTATTTAAGGATTTAATTGACTCGAAAATGATTCCTCGTGTGAATTTAACTGAAGT
TTACCGTCAACAAGATGGTTCAAGTATTATTGAATTAGCGCACAGGATGAAGCTAGGAGAAAAGATTGATATTACACAAC
GATTTCATGATCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCTGTTGTTGAAAAAGTAGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATAAAGAAACTAAATAC
AGTATTACAAGATATCTTGAATCCTAAAGAACAGGATACTCGAGAAATTGAGTTTGGCGACATTGTTTTTAGAAAAGGTG
ATAAGGTATTACAACTTGTTAACCGACCAAGCGATAATATATTTAATGGTGATATTGGAGTTATTGTAGGTATCTTCTGG
GCTAAAGAAAATGCGTTAAACAAAGATGTTTTGGTAGTTGATTTTGAAGGTAACGAGATTACGTTTGTTCGGCAAGATTT
AATGGAATTAACACACGCTTATTGTACATCAATTCATAAGTCACAAGGTTCAGAATTTCCAATCGTTATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACCCGTGCCAAACAGTCACTTGTGTTCTTA
GGAGACCCACAAGCATTCGATATTGGCCTAAAGACTCATGGCCAAGTGAGAATGACACAATTGTGTGTGTTTCTTAAAGC
GTATTTTAATAATGATGAAGAAACTGAAAGTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGGGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.314

100

0.503

Multiple sequence alignment