Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXE36_RS05560 Genome accession   NZ_LT992469
Coordinates   1039728..1040501 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 15_LA_305     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034728..1045501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE36_RS05525 - 1034981..1035751 (-) 771 WP_000473705.1 isoprenyl transferase -
  DXE36_RS05530 frr 1036124..1036678 (-) 555 WP_001280006.1 ribosome recycling factor -
  DXE36_RS05535 pyrH 1036697..1037419 (-) 723 WP_000057330.1 UMP kinase -
  DXE36_RS05540 tsf 1037556..1038437 (-) 882 WP_000201387.1 translation elongation factor Ts -
  DXE36_RS05545 - 1038472..1038585 (-) 114 WP_001789890.1 hypothetical protein -
  DXE36_RS05550 rpsB 1038619..1039386 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  DXE36_RS05555 - 1039585..1039677 (-) 93 WP_001790530.1 hypothetical protein -
  DXE36_RS05560 codY 1039728..1040501 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXE36_RS05565 hslU 1040526..1041929 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DXE36_RS05570 hslV 1041995..1042540 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DXE36_RS05575 xerC 1042537..1043433 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  DXE36_RS05580 trmFO 1043850..1045157 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1033930 DXE36_RS05560 WP_000055337.1 1039728..1040501(-) (codY) [Staphylococcus aureus isolate 15_LA_305]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1033930 DXE36_RS05560 WP_000055337.1 1039728..1040501(-) (codY) [Staphylococcus aureus isolate 15_LA_305]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment