Detailed information NTG1033193

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB8O67_RS08945
• Genome accession: NZ_CP166053
• Coordinates: 1689931..1690710 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus halotolerans strain XYK2-4
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1684931..1695710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8O67_RS08925 (AB8O67_08935)	trmFO	1685625..1686932 (+)	1308	WP_106294747.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB8O67_RS08930 (AB8O67_08940)	xerC	1687000..1687914 (+)	915	WP_326139872.1	tyrosine recombinase XerC	-
AB8O67_RS08935 (AB8O67_08945)	clpQ	1687927..1688472 (+)	546	WP_014663962.1	ATP-dependent protease subunit ClpQ	-
AB8O67_RS08940 (AB8O67_08950)	hslU	1688489..1689892 (+)	1404	WP_044155901.1	HslU--HslV peptidase ATPase subunit	-
AB8O67_RS08945 (AB8O67_08955)	codY	1689931..1690710 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB8O67_RS08950 (AB8O67_08960)	flgB	1691093..1691482 (+)	390	WP_044155900.1	flagellar basal body rod protein FlgB	-
AB8O67_RS08955 (AB8O67_08965)	flgC	1691482..1691934 (+)	453	WP_044155899.1	flagellar basal body rod protein FlgC	-
AB8O67_RS08960 (AB8O67_08970)	fliE	1691945..1692265 (+)	321	WP_024121395.1	flagellar hook-basal body complex protein FliE	-
AB8O67_RS08965 (AB8O67_08975)	fliF	1692311..1693921 (+)	1611	WP_059335795.1	flagellar basal-body MS-ring/collar protein FliF	-
AB8O67_RS08970 (AB8O67_08980)	fliG	1693934..1694950 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AB8O67_RS08975 (AB8O67_08985)	fliH	1694943..1695695 (+)	753	WP_059292787.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1033193 AB8O67_RS08945 WP_003220850.1 1689931..1690710(+) (codY) [Bacillus halotolerans strain XYK2-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1033193 AB8O67_RS08945 WP_003220850.1 1689931..1690710(+) (codY) [Bacillus halotolerans strain XYK2-4]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467