Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB8O67_RS08915 Genome accession   NZ_CP166053
Coordinates   1682386..1683285 (+) Length   299 a.a.
NCBI ID   WP_059335799.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1677386..1688285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS08895 (AB8O67_08905) - 1678055..1679785 (+) 1731 WP_369888605.1 hypothetical protein -
  AB8O67_RS08900 (AB8O67_08910) - 1679782..1680063 (+) 282 WP_326139868.1 FlhB-like flagellar biosynthesis protein -
  AB8O67_RS08905 (AB8O67_08915) sucC 1680237..1681394 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  AB8O67_RS08910 (AB8O67_08920) sucD 1681423..1682325 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  AB8O67_RS08915 (AB8O67_08925) dprA 1682386..1683285 (+) 900 WP_059335799.1 DNA-processing protein DprA Machinery gene
  AB8O67_RS08920 (AB8O67_08930) topA 1683474..1685549 (+) 2076 WP_369888556.1 type I DNA topoisomerase -
  AB8O67_RS08925 (AB8O67_08935) trmFO 1685625..1686932 (+) 1308 WP_106294747.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB8O67_RS08930 (AB8O67_08940) xerC 1687000..1687914 (+) 915 WP_326139872.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.28 Da        Isoelectric Point: 9.3995

>NTDB_id=1033192 AB8O67_RS08915 WP_059335799.1 1682386..1683285(+) (dprA) [Bacillus halotolerans strain XYK2-4]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1033192 AB8O67_RS08915 WP_059335799.1 1682386..1683285(+) (dprA) [Bacillus halotolerans strain XYK2-4]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCGGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836

Multiple sequence alignment