Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JNUCC21_RS08490 Genome accession   NZ_CP166019
Coordinates   1659470..1660249 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. JNUCC-21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654470..1665249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS08470 (JNUCC21_08490) trmFO 1655157..1656464 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JNUCC21_RS08475 (JNUCC21_08495) xerC 1656534..1657451 (+) 918 WP_150941215.1 tyrosine recombinase XerC -
  JNUCC21_RS08480 (JNUCC21_08500) hslV 1657467..1658012 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JNUCC21_RS08485 (JNUCC21_08505) hslU 1658029..1659432 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  JNUCC21_RS08490 (JNUCC21_08510) codY 1659470..1660249 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JNUCC21_RS08495 (JNUCC21_08515) flgB 1660603..1660992 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JNUCC21_RS08500 (JNUCC21_08520) flgC 1660992..1661444 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  JNUCC21_RS08505 (JNUCC21_08525) fliE 1661455..1661775 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JNUCC21_RS08510 (JNUCC21_08530) fliF 1661818..1663428 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  JNUCC21_RS08515 (JNUCC21_08535) fliG 1663441..1664457 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JNUCC21_RS08520 (JNUCC21_08540) fliH 1664450..1665205 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1033116 JNUCC21_RS08490 WP_003154263.1 1659470..1660249(+) (codY) [Bacillus sp. JNUCC-21]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1033116 JNUCC21_RS08490 WP_003154263.1 1659470..1660249(+) (codY) [Bacillus sp. JNUCC-21]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment