Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DYY92_RS01185 Genome accession   NZ_LT992434
Coordinates   231084..231857 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-WT     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 226084..236857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS01165 trmFO 226427..227734 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DYY92_RS01170 xerC 228152..229048 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  DYY92_RS01175 hslV 229045..229590 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DYY92_RS01180 hslU 229656..231059 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DYY92_RS01185 codY 231084..231857 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DYY92_RS01190 - 231908..232000 (+) 93 WP_031785459.1 hypothetical protein -
  DYY92_RS01195 rpsB 232199..232966 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  DYY92_RS01200 - 233000..233113 (+) 114 WP_001789890.1 hypothetical protein -
  DYY92_RS01205 tsf 233148..234029 (+) 882 WP_000201387.1 translation elongation factor Ts -
  DYY92_RS01210 pyrH 234166..234888 (+) 723 WP_000057330.1 UMP kinase -
  DYY92_RS01215 frr 234907..235461 (+) 555 WP_001280003.1 ribosome recycling factor -
  DYY92_RS01220 - 235833..236603 (+) 771 WP_115657038.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=1032659 DYY92_RS01185 WP_000055334.1 231084..231857(+) (codY) [Staphylococcus aureus isolate 1549-WT]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1032659 DYY92_RS01185 WP_000055334.1 231084..231857(+) (codY) [Staphylococcus aureus isolate 1549-WT]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428