Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB8E30_RS06255 Genome accession   NZ_CP165965
Coordinates   1195317..1197644 (+) Length   775 a.a.
NCBI ID   WP_369902493.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190317..1202644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS06240 (AB8E30_06240) - 1191487..1191771 (+) 285 WP_369903471.1 post-transcriptional regulator -
  AB8E30_RS06245 (AB8E30_06245) secDF 1191873..1194134 (+) 2262 WP_369902491.1 protein translocase subunit SecDF -
  AB8E30_RS06250 (AB8E30_06250) - 1194359..1195252 (+) 894 WP_369902492.1 cation diffusion facilitator family transporter -
  AB8E30_RS06255 (AB8E30_06255) recJ 1195317..1197644 (+) 2328 WP_369902493.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB8E30_RS06260 (AB8E30_06260) - 1197706..1198218 (+) 513 WP_369902494.1 adenine phosphoribosyltransferase -
  AB8E30_RS06265 (AB8E30_06265) - 1198579..1200762 (+) 2184 WP_369902495.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB8E30_RS06270 (AB8E30_06270) dtd 1200776..1201216 (+) 441 WP_369902496.1 D-aminoacyl-tRNA deacylase -
  AB8E30_RS06275 (AB8E30_06275) - 1201249..1201428 (-) 180 WP_369902497.1 hypothetical protein -
  AB8E30_RS06280 (AB8E30_06280) - 1201514..1201690 (+) 177 WP_034638678.1 hypothetical protein -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 87838.27 Da        Isoelectric Point: 4.9625

>NTDB_id=1032631 AB8E30_RS06255 WP_369902493.1 1195317..1197644(+) (recJ) [Bacillus manliponensis strain jeju3-1]
MLKAKTRWKEKEHNESQVNELANKLQLTPLVTSLFISRGLDTEEKVTEFLSTDDQEFHDPFLLEGMDKTVERVQRAIANG
EQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKEL
GMDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVVLHGENRLL
VQRGLKKLRTTKNIGLQALFKVAKLSQSEITEESVGFSIGPRINAVGRLEDATPAVHLLLSEDPEEAAELAQEIDELNKL
RKDIVKQITEEAIAEVETYYPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDKEKEIAKGSARSIEGFDLY
ANLSDCRDILPHFGGHPMAAGMTLHMNDVEQLRNRLNAQADAVLTEEDFTPITTVDVVCRVEDVTLSAIEEMQKLAPFGV
GNPKPRIAVEGAELESIRAIGSDGSHLKMTLKDEHATLDTIGFGFGALTKEISPVTRVSVLGEASINEWNNFRKPQLMIQ
DIAVKAWQLFDWRSMRNVETNLAELPHEKLTIVYFTEETMRKFSLDEYKDYIVHASAVPTLEDRYVVLLDLPQSTEELQK
ICMNGFPSRIYTVFYQENNHLFSTVPTREHFKWYYSFLHKKAPFSLKQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEKMQKRDLTESNTYREKINQLQLEKDLVYSTYQQLYTWFETIRNHKEV

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=1032631 AB8E30_RS06255 WP_369902493.1 1195317..1197644(+) (recJ) [Bacillus manliponensis strain jeju3-1]
GTGTTAAAAGCGAAGACGCGTTGGAAAGAAAAAGAACATAATGAATCTCAAGTGAACGAATTAGCAAATAAACTGCAATT
AACGCCGCTTGTTACTTCGTTATTTATAAGTAGAGGTCTTGATACAGAAGAGAAAGTTACAGAGTTTTTAAGTACAGATG
ATCAAGAATTCCATGACCCATTTCTACTAGAAGGAATGGATAAAACGGTAGAACGAGTGCAAAGAGCGATTGCAAACGGT
GAACAAATTTTAATATTTGGCGATTATGATGCAGACGGTGTAAGTAGTACAACGGTACTGTTTTTAGCATTGCAAGAGTT
AGGGGCGGACGTCGAATTTTATATTCCAAATCGTTTTACCGAAGGATATGGTCCGAATGAAGAAGCATTTCGCTGGGCGC
ATCGCGCAGGATTTTCACTTATTATTACAGTTGATACGGGAATTGCAGCTGTCCATGAAGCGCAGGTGGCAAAAGAACTT
GGTATGGATTTAATTATTACCGATCATCATGAGCCACCACCAGAGTTGCCAGAAGCACTTGCAATTATTCATCCAAAGTT
AGAGGGTGGTGTGTACCCGTTTCATTATTTAGCAGGTGTTGGTGTTGCGTTTAAAGTAGCGCACGCTTTGCTTGGCCGAG
TGCCAGAGCATTTATTAGAAATTGCAGTTATCGGTACAGTTGCAGACTTAGTAGTACTTCATGGAGAAAATCGGCTTCTC
GTGCAGCGTGGGTTGAAGAAATTGCGAACAACAAAGAACATTGGGTTGCAGGCGTTATTTAAAGTAGCAAAGCTTTCGCA
AAGTGAAATTACAGAAGAAAGTGTTGGATTTTCAATCGGCCCGCGTATTAATGCGGTTGGCCGTTTAGAGGACGCGACGC
CAGCTGTACACTTATTGTTATCAGAAGACCCTGAGGAAGCAGCTGAGCTTGCGCAGGAAATCGATGAGTTGAACAAATTG
CGAAAAGATATTGTAAAACAAATTACAGAGGAAGCGATTGCGGAAGTAGAGACATACTATCCACCAGAAGAGAATAAAGT
ATTGGTGCTAGCAAAAGAAGGGTGGAACCCTGGGGTTATTGGAATTGTTGCTTCTAAATTAGTAGAGCGTTTTTATCGCC
CAACAATTGTGCTTTGTATTGATAAGGAAAAAGAAATAGCTAAAGGTTCGGCCCGTAGTATTGAAGGATTCGATTTATAT
GCGAATTTATCAGATTGCCGTGATATTTTACCACACTTTGGTGGGCACCCGATGGCAGCTGGAATGACGCTTCATATGAA
TGATGTTGAACAGCTAAGAAATCGACTGAATGCGCAGGCAGATGCTGTATTGACGGAGGAAGACTTCACACCAATTACGA
CTGTAGATGTAGTTTGTAGAGTGGAAGATGTGACGTTATCTGCGATTGAAGAGATGCAAAAACTTGCTCCGTTTGGTGTC
GGGAATCCGAAACCGCGTATTGCGGTAGAAGGTGCTGAATTAGAAAGTATCCGAGCGATTGGTTCTGATGGCTCTCATTT
GAAAATGACATTAAAAGATGAACACGCTACATTAGATACGATTGGATTTGGGTTTGGAGCATTGACGAAAGAAATTTCAC
CTGTTACTCGCGTTTCTGTGTTAGGAGAAGCGTCTATTAATGAGTGGAACAATTTTAGAAAACCACAGCTTATGATTCAA
GATATCGCTGTGAAAGCATGGCAATTATTCGATTGGCGCAGTATGAGAAATGTTGAAACAAATCTTGCTGAGTTACCTCA
TGAGAAATTAACAATTGTTTATTTTACAGAGGAAACGATGCGAAAATTCTCCTTAGATGAATATAAGGACTATATTGTAC
ATGCTTCTGCTGTTCCGACGTTAGAAGATCGCTACGTTGTGCTTCTTGATTTACCACAGTCTACAGAAGAATTACAAAAG
ATTTGTATGAACGGCTTCCCATCTCGTATTTATACAGTCTTTTATCAAGAAAATAATCATTTGTTTAGTACGGTTCCAAC
GAGAGAACACTTTAAATGGTATTATTCTTTCTTGCACAAAAAAGCTCCGTTTTCATTGAAACAATACGGTGAACAGCTTT
GCAGACATAAAGGCTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAACTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCAGAAAAAATGCAAAAGCGTGATTTAACGGAATCGAACACATATCGTGAGAAAATAAACCA
ACTGCAGCTTGAAAAGGATTTAGTATATAGTACGTATCAACAGTTATACACTTGGTTTGAGACGATTCGTAATCATAAGG
AAGTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(314-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.876

99.871

0.538

Multiple sequence alignment