Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | MFPB16_RS04675 | Genome accession | NZ_LT960788 |
| Coordinates | 919616..920896 (-) | Length | 426 a.a. |
| NCBI ID | WP_011374543.1 | Uniprot ID | Q38XE0 |
| Organism | Latilactobacillus sakei strain MFPB16A1401 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 914616..925896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MFPB16_RS04645 (MFPB16_0903) | - | 914852..915454 (-) | 603 | WP_099960280.1 | nitroreductase family protein | - |
| MFPB16_RS04650 (MFPB16_0905) | - | 915782..916756 (+) | 975 | WP_011374538.1 | DUF2785 domain-containing protein | - |
| MFPB16_RS04655 (MFPB16_0906) | - | 916783..917433 (+) | 651 | WP_016265014.1 | HAD family hydrolase | - |
| MFPB16_RS04660 (MFPB16_0907) | - | 917573..918427 (+) | 855 | WP_025015819.1 | helix-turn-helix domain-containing protein | - |
| MFPB16_RS04665 (MFPB16_0908) | - | 918469..918963 (-) | 495 | WP_011374541.1 | universal stress protein | - |
| MFPB16_RS04670 (MFPB16_0909) | - | 919026..919301 (-) | 276 | WP_016265016.1 | hypothetical protein | - |
| MFPB16_RS04675 (MFPB16_0910) | rarA | 919616..920896 (-) | 1281 | WP_011374543.1 | replication-associated recombination protein A | Machinery gene |
| MFPB16_RS04680 (MFPB16_0911) | gshAB | 921029..923308 (+) | 2280 | WP_025015818.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| MFPB16_RS04685 (MFPB16_0912) | - | 923443..923886 (-) | 444 | WP_016265018.1 | YueI family protein | - |
| MFPB16_RS04690 (MFPB16_0913) | - | 923957..924562 (+) | 606 | WP_016265019.1 | DUF1054 domain-containing protein | - |
| MFPB16_RS04695 (MFPB16_0914) | rpsD | 924658..925263 (-) | 606 | WP_011374547.1 | 30S ribosomal protein S4 | - |
Sequence
Protein
Download Length: 426 a.a. Molecular weight: 46634.27 Da Isoelectric Point: 6.8680
>NTDB_id=1032522 MFPB16_RS04675 WP_011374543.1 919616..920896(-) (rarA) [Latilactobacillus sakei strain MFPB16A1401]
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
Nucleotide
Download Length: 1281 bp
>NTDB_id=1032522 MFPB16_RS04675 WP_011374543.1 919616..920896(-) (rarA) [Latilactobacillus sakei strain MFPB16A1401]
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
66.427 |
97.887 |
0.65 |