Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QUE23_RS02530 Genome accession   NZ_AP028022
Coordinates   500834..501604 (-) Length   256 a.a.
NCBI ID   WP_286349094.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495834..506604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS02515 (NHP21005_05280) - 497642..498271 (-) 630 WP_286349092.1 thioredoxin fold domain-containing protein -
  QUE23_RS02520 hemH 498320..499289 (-) 970 Protein_492 ferrochelatase -
  QUE23_RS02525 (NHP21005_05310) gatB 499363..500793 (+) 1431 WP_286349093.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  QUE23_RS02530 (NHP21005_05320) comB8 500834..501604 (-) 771 WP_286349094.1 VirB8/TrbF family protein Machinery gene
  QUE23_RS02535 (NHP21005_05330) - 501594..502457 (-) 864 WP_286349095.1 pirin family protein -
  QUE23_RS02540 (NHP21005_05340) prpD 502490..503914 (-) 1425 WP_286349096.1 2-methylcitrate dehydratase -
  QUE23_RS02545 (NHP21005_05350) - 503925..504581 (-) 657 WP_286349097.1 YggS family pyridoxal phosphate-dependent enzyme -
  QUE23_RS02550 (NHP21005_05360) - 504571..506403 (-) 1833 WP_286349098.1 menaquinone biosynthesis decarboxylase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29173.68 Da        Isoelectric Point: 9.1108

>NTDB_id=103232 QUE23_RS02530 WP_286349094.1 500834..501604(-) (comB8) [Helicobacter sp. NHP21005 strain NHP21-005]
METNNSPLKDAIVAELWAKIQAEQDKFQKDMESKIESLAAQNLDLNSVFRVERRNSALAYKLVVLLSFISLALIVALIML
LPLKKTEHHFIDFANQDKHYAIIQKADGNLASNEALVRSLVGQYVLDRESINHIDDQERYEVVRLQSNPQVWQVFESLVA
SKNSIYTAQQLTRDIHIINISLLKQSKEQNIAQVQIVAKLFRAGSPLTEKRYNIVLSFSFKPLPAFDTAMMPKNPTGFEV
TRYSVTEMQNLKALKP

Nucleotide


Download         Length: 771 bp        

>NTDB_id=103232 QUE23_RS02530 WP_286349094.1 500834..501604(-) (comB8) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGGAGACTAACAACAGCCCCTTAAAAGACGCGATTGTCGCCGAGTTGTGGGCGAAAATCCAAGCCGAACAAGACAAATT
CCAAAAAGACATGGAGAGCAAAATTGAGAGTTTGGCGGCGCAGAATTTGGACTTAAACAGCGTCTTTAGGGTAGAAAGGC
GTAATAGCGCACTGGCGTATAAATTAGTCGTCTTGCTAAGTTTCATTAGTTTGGCGTTGATTGTCGCCTTAATCATGCTC
TTACCCCTAAAGAAAACCGAGCACCATTTTATAGACTTCGCCAACCAAGACAAGCACTACGCCATCATCCAAAAGGCAGA
CGGCAATTTGGCAAGCAATGAAGCCCTCGTGCGCTCTTTAGTGGGGCAGTATGTCCTAGATAGGGAGTCGATCAACCACA
TAGACGATCAAGAGCGTTATGAAGTGGTGCGCCTGCAAAGCAACCCACAGGTGTGGCAAGTCTTTGAAAGTTTAGTGGCC
TCTAAAAACAGCATTTACACCGCCCAACAACTCACAAGGGACATCCACATCATCAACATCTCTTTACTCAAGCAGAGCAA
AGAGCAGAACATCGCCCAAGTGCAGATCGTGGCAAAGCTCTTTAGGGCGGGCAGTCCCCTCACAGAAAAACGCTATAACA
TTGTGTTGAGCTTTTCTTTTAAGCCCCTGCCCGCCTTTGACACCGCCATGATGCCTAAGAACCCCACGGGCTTTGAAGTT
ACCCGTTACAGCGTGACTGAAATGCAAAATCTCAAGGCTCTAAAGCCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(50-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

57.014

86.328

0.492

Multiple sequence alignment