Detailed information NTG1032274

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LSAF01_RS04070
• Genome accession: NZ_LT960777
• Coordinates: 802225..804753 (+)
• Length: 842 a.a.
• NCBI ID: WP_099947648.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain FLEC01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 797225..809753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSAF01_RS04050 (LSAF01_0812)	-	797869..799167 (+)	1299	WP_056948397.1	pyrimidine-nucleoside phosphorylase	-
LSAF01_RS04055 (LSAF01_0813)	-	799404..800738 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
LSAF01_RS04060 (LSAF01_0814)	-	800889..801548 (+)	660	WP_011374509.1	histidine phosphatase family protein	-
LSAF01_RS04065 (LSAF01_0815)	-	801560..802219 (+)	660	WP_011374510.1	tetratricopeptide repeat protein	-
LSAF01_RS04070 (LSAF01_0816)	recD/recD2/recDB	802225..804753 (+)	2529	WP_099947648.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LSAF01_RS04075 (LSAF01_0817)	eis	804796..806007 (+)	1212	WP_011374512.1	enhanced intracellular survival protein Eis	-
LSAF01_RS04080 (LSAF01_0818)	-	806068..806307 (-)	240	WP_011374513.1	hypothetical protein	-
LSAF01_RS04085 (LSAF01_0819)	-	806573..807184 (+)	612	WP_056948489.1	LysE/ArgO family amino acid transporter	-
LSAF01_RS04090 (LSAF01_0820)	-	807275..808375 (+)	1101	WP_011374515.1	DNA alkylation repair protein	-
LSAF01_RS04095 (LSAF01_0821)	-	808569..809285 (+)	717	WP_076631884.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93347.48 Da
• Isoelectric Point: 5.0770

>NTDB_id=1032274 LSAF01_RS04070 WP_099947648.1 802225..804753(+) (recD/recD2/recDB) [Latilactobacillus sakei strain FLEC01]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQITNHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
SLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=1032274 LSAF01_RS04070 WP_099947648.1 802225..804753(+) (recD/recD2/recDB) [Latilactobacillus sakei strain FLEC01]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGATGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAACATCTACCAAACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTTGGTGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTACCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TCATTGGCAGCGCCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGAATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTATCGACAAGACGATGAGTCGACGATTATTCCGCTAGCTCATGAGATTAATCAGGGCCAACTACCAGCCG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCGGTGATTAAGCAAGTGGTC
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGTAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAACTAAACGTTTTTAACGGTGAAATCGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGCTGAAACGAAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAGGCGGCCAAGGAACTCTCCGCAAATCGGCAAACAACGCTTAA
GGAACGGATTATCAGCGTCTTTAATGGCGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACTAACCCCGGCTAAAGCAGCAGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGGATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.8	89.074	0.417