Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   CKV96_RS08830 Genome accession   NZ_LT906476
Coordinates   1936868..1938172 (-) Length   434 a.a.
NCBI ID   WP_014844139.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931868..1943172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV96_RS08810 (SAMEA4040027_01743) fliF 1932065..1933699 (-) 1635 WP_014844135.1 flagellar basal-body MS-ring/collar protein FliF -
  CKV96_RS08815 (SAMEA4040027_01744) fliE 1933872..1934186 (-) 315 WP_014844136.1 flagellar hook-basal body complex protein FliE -
  CKV96_RS08820 (SAMEA4040027_01745) fleR 1934201..1935514 (-) 1314 WP_014844137.1 sigma-54-dependent response regulator transcription factor FleR -
  CKV96_RS08825 (SAMEA4040027_01746) - 1935538..1936569 (-) 1032 WP_027219796.1 sensor histidine kinase -
  CKV96_RS08830 (SAMEA4040027_01747) rarA 1936868..1938172 (-) 1305 WP_014844139.1 replication-associated recombination protein A Machinery gene
  CKV96_RS08835 (SAMEA4040027_01748) lolA 1938188..1938796 (-) 609 WP_014844140.1 outer membrane lipoprotein chaperone LolA -
  CKV96_RS08840 (SAMEA4040027_01749) - 1938799..1941183 (-) 2385 WP_027219795.1 DNA translocase FtsK -
  CKV96_RS08845 (SAMEA4040027_01750) trxB 1941256..1942206 (+) 951 WP_014844142.1 thioredoxin-disulfide reductase -
  CKV96_RS08850 (SAMEA4040027_01751) aat 1942209..1942877 (+) 669 WP_027219794.1 leucyl/phenylalanyl-tRNA--protein transferase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48636.01 Da        Isoelectric Point: 7.0467

>NTDB_id=1031973 CKV96_RS08830 WP_014844139.1 1936868..1938172(-) (rarA) [Legionella pneumophila strain NCTC11286]
MSLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKP
LSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKDMKKKV

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=1031973 CKV96_RS08830 WP_014844139.1 1936868..1938172(-) (rarA) [Legionella pneumophila strain NCTC11286]
ATGAGCCTATTCAATAAAGAACCTGATCCACCATTGGCTGAAAGTTTAAGGCCTCAGCATATCAATGAGGTCATAGGTCA
AAGTCATTTGCTTGGAGAGGGTAAACCCCTAAGACTTTGTTTTATGGGCTCCAAATTGCATTCTATGATCTTATGGGGGC
CACCAGGGGTCGGTAAGACTACTATAGCAAGATTAACCGCACAGGCTTTTGATTGTGAATGGATAGCATTATCAGCTGTG
TTTTCGGGTGTTAAGGATATTCGAGCTGCGATTGAGAAAGCGCAGGAATATTTAATTCATGATAAACAGACTATCTTGTT
TATTGATGAAATTCATAGATTTAATAAAGCTCAGCAAGATGCCTTATTACCTTATACAGAATCAGGTTTAATTACTTTCA
TTGGGGCAACTACAGAAAATCCCTCTTTTGAGGTTAATCCAGCGTTATTATCACGGGCGCAAGTTTATGTTTTAAAACCG
TTATCGGAGCAGGAGTTAAAACTCTTATTTCTTAGGGCTAAGCAAAGAGCGTTATCTTCTCTGCAATTTACCGAGGAAGC
CATGGATTTTTTAATTTCTTGTGCTGATGGAGATGCCAGACGATTACTCAATTTACTTGAGCAAACAAAAACAGCCTGCC
TAACAATTAAAACAGCAGTTGTTGATGTAGAGCTTTTACATAATGTGATAGTACAAAGTGGTCGACGTTTTGATAAAGGT
GGAGAAGCGTTTTACGATCAGATTTCTGCTTTACATAAGTCGGTACGAGGCTCTAATCCTGATGCGGCATTATATTGGCT
ATGTCGAATGCTGGATGGTGGTGTGGATCCATATTATTTAGCCAGACGTATTATTAGAATGTCATGGGAAGACATTGGGT
TAGCAGATCCGAAAGCAATTCAAATCGCTAATGATGCTGCTGCAACTTATGAGAGGCTTGGCTCACCCGAGGGCGAGCTT
GCTTTGGCACAAGCTGTAATTTATTTGTCTGTTGCTGCCAAGAGCAATGCGGGATATGTCGCATTTAATCAAGCCATGGA
ATTTATAAAAAGAGACAAGTCGAGAGAAGTACCCATTCACTTGAGAAACGCTCCCACTCAATTAATGAAAAAACTAGGTT
ATGGTCATGAATATCGATATGCTCATGATGAACCACACGGCTATGCGGCTGGTGAATGTTATTTACCTGAAGGAATGCCA
GAAGTAAATTGGTATAACCCGGTACAAAGAGGTTTAGAAACTAAAATTGCAGAAAAGCTCGCTTTTCTGCGCCAATTAGA
TAAAGATATGAAAAAGAAAGTTTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(49-158)

AAA C-terminal domain (AAA_assoc_2)

(180-256)

MgsA AAA+ ATPase C terminal (MgsA_C)

(257-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.558

100

0.376