Detailed information NTG1031725

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB7T04_RS08155
• Genome accession: NZ_CP165780
• Coordinates: 1594614..1595393 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain L-15
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1589614..1600393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB7T04_RS08135 (AB7T04_08135)	trmFO	1590301..1591608 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB7T04_RS08140 (AB7T04_08140)	xerC	1591678..1592595 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB7T04_RS08145 (AB7T04_08145)	hslV	1592611..1593156 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB7T04_RS08150 (AB7T04_08150)	hslU	1593173..1594576 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
AB7T04_RS08155 (AB7T04_08155)	codY	1594614..1595393 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB7T04_RS08160 (AB7T04_08160)	flgB	1595747..1596136 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB7T04_RS08165 (AB7T04_08165)	flgC	1596136..1596588 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
AB7T04_RS08170 (AB7T04_08170)	fliE	1596599..1596919 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB7T04_RS08175 (AB7T04_08175)	fliF	1596962..1598572 (+)	1611	WP_062623353.1	flagellar basal-body MS-ring/collar protein FliF	-
AB7T04_RS08180 (AB7T04_08180)	fliG	1598585..1599601 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB7T04_RS08185 (AB7T04_08185)	fliH	1599594..1600349 (+)	756	WP_062623354.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1031725 AB7T04_RS08155 WP_003154263.1 1594614..1595393(+) (codY) [Bacillus velezensis strain L-15]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1031725 AB7T04_RS08155 WP_003154263.1 1594614..1595393(+) (codY) [Bacillus velezensis strain L-15]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACTGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471