Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   CKV75_RS02700 Genome accession   NZ_LT906456
Coordinates   582875..584215 (+) Length   446 a.a.
NCBI ID   WP_014991335.1    Uniprot ID   A0ABT1WRR4
Organism   Actinobacillus suis strain NCTC12996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 577875..589215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV75_RS02675 (SAMEA4504061_00553) msrB 578299..578694 (-) 396 WP_014991330.1 peptide-methionine (R)-S-oxide reductase MsrB -
  CKV75_RS02680 (SAMEA4504061_00554) gap 578917..579921 (+) 1005 WP_014991331.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  CKV75_RS02685 (SAMEA4504061_00555) - 580166..581218 (+) 1053 WP_014991332.1 rod shape-determining protein -
  CKV75_RS02690 (SAMEA4504061_00556) mreC 581323..582375 (+) 1053 WP_014991333.1 rod shape-determining protein MreC -
  CKV75_RS02695 (SAMEA4504061_00557) mreD 582375..582863 (+) 489 WP_014991334.1 rod shape-determining protein MreD -
  CKV75_RS02700 (SAMEA4504061_00558) rarA 582875..584215 (+) 1341 WP_014991335.1 replication-associated recombination protein A Machinery gene
  CKV75_RS02705 (SAMEA4504061_00559) znuB 584305..585090 (+) 786 WP_014991336.1 zinc ABC transporter permease subunit ZnuB -
  CKV75_RS02710 (SAMEA4504061_00560) - 585288..586088 (+) 801 WP_014991337.1 class II glutamine amidotransferase -
  CKV75_RS02715 (SAMEA4504061_00561) ispF 586438..586914 (-) 477 WP_014991338.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CKV75_RS02720 (SAMEA4504061_00562) ispD 586917..587597 (-) 681 WP_039194967.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CKV75_RS02725 (SAMEA4504061_00563) ftsB 587607..587885 (-) 279 WP_014991340.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50180.97 Da        Isoelectric Point: 7.0160

>NTDB_id=1031697 CKV75_RS02700 WP_014991335.1 582875..584215(+) (rarA) [Actinobacillus suis strain NCTC12996]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVEIHQILQNALLDKERGLGNESFVLEDDVLTLLADYVNGDGRYALNCLELMSDMAEQGIHGKILNKTLLTEVLG
ERQARFDKGGDRFYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAINAWDCYT
RVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNEAKQLAKEAKDYDVPEHLRNAPTKLMKSLGYGAEYRYAHHEPNAYAAG
ENYFPPELKDTQFYHPTERGMEKQIKEKMLWLRAQDAASAKQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1031697 CKV75_RS02700 WP_014991335.1 582875..584215(+) (rarA) [Actinobacillus suis strain NCTC12996]
ATGAGTAGCTTATCTTTTGATTTTTCTGAAGATTTTCGTCCTTTACCCGCCAGAATGCGTCCACGCACTCTGGCGGAATA
CATTGGGCAATCCCATCTTATCGGAGAGGGGAAACCTCTCCGCCGTGCCATTGAAGCAGGGCATTCTCACTCCATGATCT
TCTGGGGACCACCTGGCACAGGTAAAACCACATTAGCTGAAATTATTGCTCATCATTTTGATGCAGAAGTTGAACGTCTT
TCTGCGGTAACAAGCGGTGTTAAAGAAATTCGAGAAGCAATTGAACGCGCAAAATTGAACCGTCAAACCGGCAGACGCAC
TTTATTATTTGTAGATGAAGTACATCGTTTTAATAAAAGCCAGCAGGATGCGTTTTTACCGCATATTGAAGATGGGACGA
TTATTTTCATCGGTGCCACCACAGAAAACCCTTCCTTTGAATTAAATAATGCGTTGCTTTCCCGAGCTAGAATTTATATT
TTAAAACCATTACAAGCGGTCGAAATTCACCAAATTTTGCAAAATGCGCTATTAGATAAAGAACGTGGGTTAGGTAATGA
ATCTTTTGTTCTGGAAGATGATGTTTTAACGTTATTGGCTGACTATGTAAATGGTGATGGTCGTTATGCATTAAATTGTT
TAGAGCTTATGTCGGATATGGCGGAACAAGGCATTCATGGCAAAATTTTAAATAAAACGCTGCTCACAGAAGTCTTAGGT
GAACGCCAAGCTCGTTTTGATAAAGGCGGTGATCGTTTTTATGATCTGATTTCCGCATTACATAAGTCGGTGAGAGGATC
TTCGCCGGATGGTGCATTGTATTGGTATGCCAGAATTTTAACTGCGGGAGGCGATCCTTTATATGTTGCACGTAGATTAC
TGGCGATAGCTTCCGAAGATATCGGCAATGCAGATCCAAGAGCAATGCAAATTGCGATTAATGCTTGGGATTGTTATACC
CGGGTCGGTGCTTATGAAGGTGAAAGAGCGATTGCTCAAGCTATTATTTATTTGGCAGTAGCACCTAAAAGTAATGCGGT
ATATAACGCTTTTAATGAAGCGAAGCAATTAGCCAAAGAGGCGAAAGATTATGATGTACCGGAGCATTTACGCAATGCGC
CAACGAAACTAATGAAGTCTTTGGGCTATGGTGCAGAATATCGCTATGCACATCATGAACCTAACGCTTATGCTGCCGGT
GAGAATTATTTTCCTCCTGAATTGAAGGATACGCAGTTTTACCACCCGACAGAAAGAGGCATGGAAAAACAGATAAAAGA
AAAAATGTTATGGCTGAGAGCACAAGATGCGGCAAGTGCAAAGCAACGGTATAAGCGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(186-265)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.471

95.291

0.386