Detailed information NTG1030797

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB3D65_RS08205
• Genome accession: NZ_CP165606
• Coordinates: 1642242..1643021 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain BP1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1637242..1648021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3D65_RS08175 (AB3D65_08175)	fliH	1637286..1638041 (-)	756	WP_369546692.1	flagellar assembly protein FliH	-
AB3D65_RS08180 (AB3D65_08180)	fliG	1638034..1639050 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB3D65_RS08185 (AB3D65_08185)	fliF	1639063..1640673 (-)	1611	WP_369546693.1	flagellar basal-body MS-ring/collar protein FliF	-
AB3D65_RS08190 (AB3D65_08190)	fliE	1640716..1641036 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB3D65_RS08195 (AB3D65_08195)	flgC	1641047..1641499 (-)	453	WP_020955818.1	flagellar basal body rod protein FlgC	-
AB3D65_RS08200 (AB3D65_08200)	flgB	1641499..1641888 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB3D65_RS08205 (AB3D65_08205)	codY	1642242..1643021 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB3D65_RS08210 (AB3D65_08210)	hslU	1643059..1644462 (-)	1404	WP_414651093.1	HslU--HslV peptidase ATPase subunit	-
AB3D65_RS08215 (AB3D65_08215)	hslV	1644479..1645024 (-)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB3D65_RS08220 (AB3D65_08220)	xerC	1645040..1645957 (-)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB3D65_RS08225 (AB3D65_08225)	trmFO	1646027..1647334 (-)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1030797 AB3D65_RS08205 WP_003154263.1 1642242..1643021(-) (codY) [Bacillus velezensis strain BP1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1030797 AB3D65_RS08205 WP_003154263.1 1642242..1643021(-) (codY) [Bacillus velezensis strain BP1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471