Detailed information NTG1030779

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AB3D65_RS03540
• Genome accession: NZ_CP165606
• Coordinates: 625039..627417 (+)
• Length: 792 a.a.
• NCBI ID: WP_369546382.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BP1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 620039..632417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3D65_RS03515 (AB3D65_03515)	-	620123..621391 (-)	1269	WP_003152729.1	replication-associated recombination protein A	-
AB3D65_RS03520 (AB3D65_03520)	cymR	621586..622002 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
AB3D65_RS03525 (AB3D65_03525)	-	622021..623160 (+)	1140	WP_151296330.1	cysteine desulfurase family protein	-
AB3D65_RS03530 (AB3D65_03530)	mnmA	623197..624312 (+)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
AB3D65_RS03535 (AB3D65_03535)	-	624400..625020 (+)	621	WP_088461189.1	tetratricopeptide repeat protein	-
AB3D65_RS03540 (AB3D65_03540)	recD2	625039..627417 (+)	2379	WP_369546382.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AB3D65_RS03545 (AB3D65_03545)	-	627536..627994 (+)	459	WP_007408205.1	PRC-barrel domain-containing protein	-
AB3D65_RS03550 (AB3D65_03550)	-	628007..628198 (+)	192	WP_003152738.1	hypothetical protein	-
AB3D65_RS03555 (AB3D65_03555)	-	628220..628351 (+)	132	WP_003152741.1	YrzQ family protein	-
AB3D65_RS03560 (AB3D65_03560)	-	628387..629043 (-)	657	WP_015417903.1	amino acid ABC transporter permease	-
AB3D65_RS03565 (AB3D65_03565)	-	629062..629712 (-)	651	WP_007408207.1	amino acid ABC transporter permease	-
AB3D65_RS03570 (AB3D65_03570)	-	629769..630596 (-)	828	WP_007408208.1	transporter substrate-binding domain-containing protein	-
AB3D65_RS03575 (AB3D65_03575)	-	630617..631345 (-)	729	WP_151296332.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88345.96 Da
• Isoelectric Point: 4.9490

>NTDB_id=1030779 AB3D65_RS03540 WP_369546382.1 625039..627417(+) (recD2) [Bacillus velezensis strain BP1]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILTDASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIINPPKEKRRELKFGDVAYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQRELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=1030779 AB3D65_RS03540 WP_369546382.1 625039..627417(+) (recD2) [Bacillus velezensis strain BP1]
GTGGATCAGCTGAACATCGAGGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCATAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAGCACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACAGCGGAAGAAATCGTCAAGAAGCTCGGAGACGGCGCGCTCAATAAAATTCTGACGGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTTGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACACTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACAATTGAATCGACCTGTCTTTCAGAG
GGCCATACGTACATAGAAACAAAGCAGCTGATAATCAATACGCAAACGCTCCTGAATCAGTCAGCTGAAGGCGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGGGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATT
TTCCGTCCTTGTTTTACGCCGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGAGGACCTGGGACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGAGTATCGCTTGACCCCGGTGATTATAAAAAAGACGAGGCGTTCCCGGTG
CTGCTTGCCGCGCCGACGGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATACACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGGTTTACCTACAATGAAGATCAGCCGATAGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTCGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCCCATGATATGAAAAAAGGACTGCTTCCGAAGG
GGCTGACCGCGCCGACTAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGATCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGGGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATAAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGCCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATTGGCGAAATCGTA
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCTTACTGCTGTTCCATTCATAAGTCGCAGGGGAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATAACAAGGGCGAAAAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAGAGAGCTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATCACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (341-548)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.622	99.874	0.885