Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB6L51_RS08220 Genome accession   NZ_CP163562
Coordinates   1598682..1599461 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain BC255T1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593682..1604461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS08200 (AB6L51_08205) trmFO 1594386..1595690 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB6L51_RS08205 (AB6L51_08210) xerC 1595753..1596670 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  AB6L51_RS08210 (AB6L51_08215) hslV 1596685..1597230 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  AB6L51_RS08215 (AB6L51_08220) hslU 1597247..1598647 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  AB6L51_RS08220 (AB6L51_08225) codY 1598682..1599461 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB6L51_RS08225 (AB6L51_08230) flgB 1599750..1600139 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AB6L51_RS08230 (AB6L51_08235) flgC 1600139..1600591 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  AB6L51_RS08235 (AB6L51_08240) fliE 1600603..1600920 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  AB6L51_RS08240 (AB6L51_08245) fliF 1600971..1602563 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  AB6L51_RS08245 (AB6L51_08250) fliG 1602575..1603591 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  AB6L51_RS08250 (AB6L51_08255) fliH 1603584..1604348 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1030667 AB6L51_RS08220 WP_007499612.1 1598682..1599461(+) (codY) [Bacillus altitudinis strain BC255T1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1030667 AB6L51_RS08220 WP_007499612.1 1598682..1599461(+) (codY) [Bacillus altitudinis strain BC255T1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAATAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAGAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment