Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AB6W33_RS05350 Genome accession   NZ_CP163561
Coordinates   969438..970295 (+) Length   285 a.a.
NCBI ID   WP_000163020.1    Uniprot ID   A0AAV3JMI0
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 964438..975295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS05320 (AB6W33_05320) - 964754..965635 (+) 882 WP_000919085.1 F0F1 ATP synthase subunit gamma -
  AB6W33_RS05325 (AB6W33_05325) atpD 965709..967115 (+) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  AB6W33_RS05330 (AB6W33_05330) - 967128..967541 (+) 414 WP_050881963.1 F0F1 ATP synthase subunit epsilon -
  AB6W33_RS05335 (AB6W33_05335) - 967606..967836 (+) 231 WP_000602601.1 DUF1146 family protein -
  AB6W33_RS05340 (AB6W33_05340) murA 967899..969170 (+) 1272 WP_000357877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AB6W33_RS05345 (AB6W33_05345) - 969172..969363 (+) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  AB6W33_RS05350 (AB6W33_05350) endA 969438..970295 (+) 858 WP_000163020.1 DNA/RNA non-specific endonuclease Machinery gene
  AB6W33_RS05355 (AB6W33_05355) pheS 970587..971627 (+) 1041 WP_000365655.1 phenylalanine--tRNA ligase subunit alpha -
  AB6W33_RS05360 (AB6W33_05360) - 971710..972231 (+) 522 WP_000078400.1 GNAT family N-acetyltransferase -
  AB6W33_RS05365 (AB6W33_05365) pheT 972285..974690 (+) 2406 WP_000961586.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31352.34 Da        Isoelectric Point: 10.4835

>NTDB_id=1030621 AB6W33_RS05350 WP_000163020.1 969438..970295(+) (endA) [Streptococcus agalactiae strain GBS-B4009]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1030621 AB6W33_RS05350 WP_000163020.1 969438..970295(+) (endA) [Streptococcus agalactiae strain GBS-B4009]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.379

81.404

0.54
  endA Streptococcus pneumoniae D39

66.379

81.404

0.54
  endA Streptococcus pneumoniae R6

66.379

81.404

0.54
  endA Streptococcus pneumoniae TIGR4

66.379

81.404

0.54

Multiple sequence alignment