Detailed information NTG0102999

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: YSS_RS08420
• Genome accession: NZ_CP007181
• Coordinates: 1642296..1643477 (+)
• Length: 393 a.a.
• NCBI ID: WP_025399294.1
• Uniprot ID: -
• Organism: Campylobacter coli RM4661
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1637296..1648477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSS_RS08395 (YSS_08575)	-	1638202..1639547 (-)	1346	Protein_1652	SLC13 family permease	-
YSS_RS08400 (YSS_08580)	-	1639792..1640037 (+)	246	WP_025399291.1	hypothetical protein	-
YSS_RS08405 (YSS_08585)	-	1640021..1640593 (+)	573	WP_002825721.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
YSS_RS08410 (YSS_08590)	-	1640692..1641045 (+)	354	WP_025399292.1	hypothetical protein	-
YSS_RS08415 (YSS_08595)	-	1641148..1642296 (+)	1149	WP_025399293.1	hypothetical protein	-
YSS_RS08420 (YSS_08600)	rarA	1642296..1643477 (+)	1182	WP_025399294.1	replication-associated recombination protein A	Machinery gene
YSS_RS08425 (YSS_08605)	dapB	1643540..1644268 (+)	729	WP_002860637.1	4-hydroxy-tetrahydrodipicolinate reductase	-
YSS_RS08430 (YSS_08610)	purF	1644270..1645607 (+)	1338	WP_002825716.1	amidophosphoribosyltransferase	-
YSS_RS08435 (YSS_08615)	-	1645611..1646423 (-)	813	WP_002792006.1	CPBP family intramembrane glutamic endopeptidase	-
YSS_RS08440 (YSS_08620)	-	1646764..1647335 (+)	572	Protein_1661	cytochrome c3 family protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 44781.61 Da
• Isoelectric Point: 7.8209

>NTDB_id=102999 YSS_RS08420 WP_025399294.1 1642296..1643477(+) (rarA) [Campylobacter coli RM4661]
MSLALNFRPKTLDEILGQQELVEVFKKFISMQKLPHSLFFGPAGCGKTTFARVVAKDFGLDFYEFDGGNFKLEELRKIIE
NYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRCIVIGASTENPYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQ
KIAFKIEDNAKEFLLKSFDARAMLNLLEFALVLNEKEITLENLKKLRNGVNSEGVSSKDTHYILASALIKSLRGSDVDAA
IYYLARLIDAGESADFIARRLIIFASEDISNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAIN
EALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA

Nucleotide

• Length: 1182 bp

>NTDB_id=102999 YSS_RS08420 WP_025399294.1 1642296..1643477(+) (rarA) [Campylobacter coli RM4661]
ATGAGTTTAGCTTTAAATTTTCGTCCCAAAACTCTAGATGAAATTCTAGGCCAACAAGAACTTGTAGAAGTATTTAAAAA
ATTTATCAGTATGCAAAAACTTCCCCATAGTTTATTTTTTGGACCTGCAGGATGTGGAAAAACAACCTTTGCTAGAGTTG
TAGCTAAGGATTTTGGGCTTGATTTTTATGAATTTGATGGTGGAAATTTCAAACTTGAGGAATTAAGAAAAATCATAGAA
AATTACAAAAACAGCCTTTATAAACCTCTTATTTTTATCGATGAAATTCATCGCTTGAGTAAAACTCAACAAGAAATGCT
TTTAATTCCTATGGAAAATTATCGCTGCATTGTTATAGGTGCAAGTACTGAAAATCCTTATTTTGTTTTAAGTTCAGGCA
TTAGAAGTCGCTCTATGCTTTTTGAATTTAAAAATCTTGGGCAAAAAGATTTAGAACTTTTATTAGAGCGAGTGCAACAA
AAAATAGCATTTAAAATAGAAGATAATGCTAAAGAATTTTTACTAAAAAGCTTCGATGCTAGAGCAATGTTAAATTTACT
TGAATTTGCTTTGGTTTTAAATGAAAAAGAAATCACTTTAGAAAATTTAAAAAAACTTCGCAACGGAGTAAATAGCGAGG
GTGTAAGCTCAAAAGATACTCATTATATTTTAGCAAGTGCTCTTATTAAAAGTTTGCGCGGAAGCGATGTGGATGCTGCT
ATTTATTATCTTGCTCGTTTAATTGATGCAGGAGAAAGCGCGGATTTTATCGCTAGGCGTTTGATTATCTTTGCAAGTGA
AGATATATCCAATGCCGATCCTAATGCTTTAAATTTAGCGGTTTCGACTCTAGAGGCTGTTAAAAATATAGGTTATCCTG
AAGCAAGAATTATCCTAGCCCAATGCGTAGTTTATTTAGCAAGCACAATCAAATCTAATGCAAGCTACAAAGCTATCAAT
GAAGCTTTAAACTATGTAAAAAATAATGAAGCTTTAGAAATACCTAATTATCTTAACAACAATCATCAAGAAAAACAAAA
CTATCTTTATCCACATGATTTTGGTGGCTGGGTAGAGCAAAAATATCTTAGTAAAAATTTAAAATTTTATCATAGCAAGG
GCTTAGGAGAAGAAGCAAAATTGTTAGATAATTTATATAAATTAAAAAACCATAAAGCTTAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (234-388)

• AAA C-terminal domain (AAA_assoc_2) (163-233)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	34.3	100	0.361