Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CS897_RS02510 Genome accession   NZ_LT635459
Coordinates   505307..505570 (-) Length   87 a.a.
NCBI ID   WP_001177718.1    Uniprot ID   Q8RMZ0
Organism   Helicobacter pylori isolate HE132/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500307..510570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS897_RS02490 - 501243..502379 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  CS897_RS08410 - 502372..502512 (-) 141 WP_000789928.1 hypothetical protein -
  CS897_RS02500 - 502509..505059 (-) 2551 Protein_480 VirB4 family type IV secretion/conjugal transfer ATPase -
  CS897_RS02505 - 505059..505295 (-) 237 WP_001168537.1 hypothetical protein -
  CS897_RS02510 comB3 505307..505570 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  CS897_RS02515 comB2 505582..505866 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  CS897_RS02520 - 505854..506342 (-) 489 WP_089086747.1 hypothetical protein -
  CS897_RS02525 - 506406..506564 (-) 159 WP_231899360.1 hypothetical protein -
  CS897_RS02530 - 506567..507367 (-) 801 WP_089086748.1 integrase -
  CS897_RS02535 - 507422..507958 (+) 537 Protein_487 DNA adenine methylase -
  CS897_RS02540 - 507961..508584 (+) 624 WP_089086749.1 GIY-YIG nuclease family protein -
  CS897_RS02545 - 508732..509094 (+) 363 Protein_489 DNA cytosine methyltransferase -
  CS897_RS02550 - 509254..510198 (-) 945 WP_089086751.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=1029981 CS897_RS02510 WP_001177718.1 505307..505570(-) (comB3) [Helicobacter pylori isolate HE132/09]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=1029981 CS897_RS02510 WP_001177718.1 505307..505570(-) (comB3) [Helicobacter pylori isolate HE132/09]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8RMZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609