Detailed information NTG1029937

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: CS894_RS02160
• Genome accession: NZ_LT635456
• Coordinates: 426553..427728 (-)
• Length: 391 a.a.
• NCBI ID: WP_089086703.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate HE101/09
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 421553..432728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS894_RS02125	-	421879..422193 (+)	315	WP_000868001.1	hypothetical protein	-
CS894_RS02130	-	422171..422938 (+)	768	WP_089086699.1	RNA polymerase sigma factor FliA	-
CS894_RS02135	fliM	422931..423995 (+)	1065	WP_000763587.1	flagellar motor switch protein FliM	-
CS894_RS02140	fliY	423999..424856 (+)	858	WP_089086700.1	flagellar motor switch protein FliY	-
CS894_RS02145	-	424886..425422 (+)	537	WP_089086701.1	YhcH/YjgK/YiaL family protein	-
CS894_RS02150	-	425419..425922 (+)	504	WP_089086702.1	DUF2147 domain-containing protein	-
CS894_RS02155	fur	425941..426393 (-)	453	WP_001253271.1	ferric iron uptake transcriptional regulator	-
CS894_RS02160	rarA	426553..427728 (-)	1176	WP_089086703.1	replication-associated recombination protein A	Machinery gene
CS894_RS02165	-	427725..428096 (-)	372	WP_000272469.1	heat shock protein transcriptional repressor HspR	-
CS894_RS02170	-	428106..428972 (-)	867	WP_089086704.1	DnaJ C-terminal domain-containing protein	-
CS894_RS02175	-	429140..430390 (+)	1251	WP_089086705.1	hypothetical protein	-
CS894_RS02180	-	430636..431502 (-)	867	WP_080387853.1	5'-3' exonuclease	-
CS894_RS02190	-	431733..432629 (-)	897	WP_089086707.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43796.48 Da
• Isoelectric Point: 8.7366

>NTDB_id=1029937 CS894_RS02160 WP_089086703.1 426553..427728(-) (rarA) [Helicobacter pylori isolate HE101/09]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLSCSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=1029937 CS894_RS02160 WP_089086703.1 426553..427728(-) (rarA) [Helicobacter pylori isolate HE101/09]
ATGAGCCTGACTGCACTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTCTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCTTAAACAAGAGCGATTTGGACAGGCTTTGCGCTAAA
GCTTTAGCATTACTCAAAAAACAAATAGAGCCTGACGCTAAAACTTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCACTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCCTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAGTGCGTGATTTATCTGTCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-118)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.621	100	0.396