Detailed information NTG1029773

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB6A33_RS08170
• Genome accession: NZ_CP163446
• Coordinates: 1614980..1615759 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain Hao 2023
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1609980..1620759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6A33_RS08150 (AB6A33_08150)	trmFO	1610667..1611974 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB6A33_RS08155 (AB6A33_08155)	xerC	1612044..1612961 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB6A33_RS08160 (AB6A33_08160)	hslV	1612977..1613522 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB6A33_RS08165 (AB6A33_08165)	hslU	1613530..1614942 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
AB6A33_RS08170 (AB6A33_08170)	codY	1614980..1615759 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB6A33_RS08175 (AB6A33_08175)	flgB	1616113..1616502 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB6A33_RS08180 (AB6A33_08180)	flgC	1616502..1616954 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
AB6A33_RS08185 (AB6A33_08185)	fliE	1616965..1617285 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB6A33_RS08190 (AB6A33_08190)	fliF	1617328..1618938 (+)	1611	WP_032874889.1	flagellar basal-body MS-ring/collar protein FliF	-
AB6A33_RS08195 (AB6A33_08195)	fliG	1618951..1619967 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB6A33_RS08200 (AB6A33_08200)	fliH	1619960..1620715 (+)	756	WP_032874891.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1029773 AB6A33_RS08170 WP_003154263.1 1614980..1615759(+) (codY) [Bacillus velezensis strain Hao 2023]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1029773 AB6A33_RS08170 WP_003154263.1 1614980..1615759(+) (codY) [Bacillus velezensis strain Hao 2023]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471