Detailed information NTG1029472

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AB4670_RS09965
• Genome accession: NZ_CP163382
• Coordinates: 2114204..2114905 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain Y03
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2109204..2119905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4670_RS09935 (AB4670_09930)	-	2109511..2109954 (-)	444	WP_001246675.1	SRPBCC family protein	-
AB4670_RS09940 (AB4670_09935)	tadA	2110024..2110527 (-)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
AB4670_RS09945 (AB4670_09940)	-	2110534..2111658 (-)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
AB4670_RS09950 (AB4670_09945)	ung	2111655..2112368 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
AB4670_RS09955 (AB4670_09950)	-	2112419..2113015 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
AB4670_RS09960 (AB4670_09955)	gspK	2113245..2114204 (-)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
AB4670_RS09965 (AB4670_09960)	xcpW	2114204..2114905 (-)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AB4670_RS09970 (AB4670_09965)	xcpV	2114905..2115285 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AB4670_RS09975 (AB4670_09970)	-	2115275..2115829 (-)	555	WP_000841373.1	type II secretion system protein	-
AB4670_RS09980 (AB4670_09975)	-	2115839..2116447 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AB4670_RS09985 (AB4670_09980)	-	2116485..2117258 (-)	774	WP_373657605.1	TatD family hydrolase	-
AB4670_RS09990 (AB4670_09985)	-	2117276..2117617 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
AB4670_RS09995 (AB4670_09990)	-	2117629..2118609 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
AB4670_RS10000 (AB4670_09995)	kdsB	2118621..2119382 (-)	762	WP_000680698.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=1029472 AB4670_RS09965 WP_000594580.1 2114204..2114905(-) (xcpW) [Acinetobacter baumannii strain Y03]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1029472 AB4670_RS09965 WP_000594580.1 2114204..2114905(-) (xcpW) [Acinetobacter baumannii strain Y03]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987