Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NST61_RS13020 Genome accession   NZ_CP163266
Coordinates   2617774..2620134 (-) Length   786 a.a.
NCBI ID   WP_368974225.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612774..2625134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST61_RS13000 (NST61_13000) - 2613277..2613453 (-) 177 WP_034771312.1 hypothetical protein -
  NST61_RS13005 (NST61_13005) dtd 2613693..2614145 (-) 453 WP_368974223.1 D-aminoacyl-tRNA deacylase -
  NST61_RS13010 (NST61_13010) - 2614159..2616351 (-) 2193 WP_368974224.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NST61_RS13015 (NST61_13015) - 2617271..2617783 (-) 513 WP_041846212.1 adenine phosphoribosyltransferase -
  NST61_RS13020 (NST61_13020) recJ 2617774..2620134 (-) 2361 WP_368974225.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NST61_RS13025 (NST61_13025) secDF 2620244..2622505 (-) 2262 WP_368974226.1 protein translocase subunit SecDF -
  NST61_RS13030 (NST61_13030) - 2622632..2622931 (-) 300 WP_368974227.1 post-transcriptional regulator -
  NST61_RS13035 (NST61_13035) spoVB 2623064..2624614 (+) 1551 WP_368974228.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88951.41 Da        Isoelectric Point: 5.7116

>NTDB_id=1029198 NST61_RS13020 WP_368974225.1 2617774..2620134(-) (recJ) [Caldifermentibacillus hisashii strain FSL K6-2771]
MLQAKTRWAVREGNRQKAEQLMNELQLTPLVANLLVNRGLDTAESVKKFLNPDEEFHHPFLLNDMDICVERIFRAIRNGE
RMVVYGDYDADGVTSTYVLLKALRELGADADFYIPNRFTEGYGPNEKAFRTLKEAGYHLIITVDNGIAGIHEAKVAKEIG
IDLIITDHHEPGPELPDCLAIIHPKRADSNYPFKDLAGVGVAFKLVTALLGKVPEELLPFAAIGTIADLVPLKDENRLIV
KKALPLLQSSDHFGLKALMRVAGINQQELNEESISFGLAPRINAPGRLYHAGMVVDLFLANDKDEAEQLAHEINEINKER
QEIVDKITVEAIEEISQSSNYIDDQVIVVGKEGWHAGVIGIVASRLVEKFYRPVIVFSFDQATGLAKGSARSIPKFNMYQ
NLFQCKELLPHFGGHPMAAGLTMKISDVPELRERLNRLASEQLDEEDFIPVTEVDGMIPLEDIHLQSVKELLQFAPFGTE
NPKPLLLINDIQLPQIKKVGAEKNHLKVIIENHSAQLDCIGFHMGDLADEISPLSKASVIGELAINEWNHVSKPQFILKD
ICIDEWQLFDYRGNRRIDQWIHQVPEKSSKLIVFRESTVNQMNLSEFAAGLEIIHSEASAKNCDIDGMNIVLIDLPQSKK
QLESLLAGKQVARIYAHFYQDDIELLNTMPTREHFKWMYAFLCKKGVFDFRRYGAELAKYKGWSLHTIKFMLTVFFELNF
VTMDNGILSVIKNPSKRDLSESKTYQLRQEIIQLEKELLFSSYKQLKNSLDRFIGTANMKEAKAWI

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1029198 NST61_RS13020 WP_368974225.1 2617774..2620134(-) (recJ) [Caldifermentibacillus hisashii strain FSL K6-2771]
ATGTTGCAAGCAAAGACGCGTTGGGCGGTTCGAGAAGGAAATCGTCAAAAAGCGGAACAATTAATGAATGAACTGCAGTT
GACACCTCTAGTAGCAAATTTATTAGTCAATCGAGGTTTAGATACGGCTGAAAGTGTAAAGAAATTTTTAAATCCGGATG
AAGAGTTTCACCATCCTTTTTTGCTTAATGATATGGATATATGTGTTGAACGAATTTTTCGGGCAATTCGAAATGGTGAG
CGAATGGTCGTGTATGGCGACTATGATGCCGATGGAGTAACAAGTACCTATGTATTATTGAAAGCATTACGTGAACTCGG
TGCGGATGCCGATTTTTATATACCAAATCGCTTCACGGAAGGATACGGCCCAAATGAAAAAGCATTTCGAACACTGAAAG
AAGCCGGTTATCATTTAATTATCACGGTTGATAACGGAATTGCCGGGATTCATGAAGCAAAAGTGGCAAAAGAAATTGGT
ATTGATTTAATCATCACCGATCATCACGAACCCGGACCGGAACTCCCGGATTGTTTGGCGATTATTCATCCGAAGAGGGC
TGATTCCAATTACCCGTTTAAAGATTTAGCCGGTGTCGGTGTCGCGTTTAAATTGGTGACAGCTCTTTTAGGGAAAGTTC
CGGAAGAATTGCTTCCATTTGCAGCAATCGGAACTATAGCTGATTTAGTACCTCTCAAAGATGAAAATCGCTTGATAGTA
AAAAAAGCATTACCTCTCTTACAATCGTCGGATCATTTTGGTTTAAAGGCGTTAATGCGGGTTGCCGGAATCAATCAGCA
AGAATTAAATGAAGAATCAATTAGTTTTGGACTAGCCCCGCGGATAAACGCTCCCGGAAGATTATACCATGCCGGTATGG
TCGTTGATTTATTTTTGGCAAATGATAAAGATGAGGCTGAACAATTGGCCCATGAAATTAATGAAATCAATAAAGAAAGA
CAAGAAATCGTCGATAAAATAACTGTTGAAGCGATTGAGGAAATTTCTCAATCATCAAATTACATAGACGATCAGGTCAT
TGTGGTCGGTAAGGAAGGCTGGCATGCAGGGGTCATTGGCATTGTTGCTTCCAGATTAGTGGAAAAATTTTATCGGCCAG
TTATTGTTTTTTCTTTTGATCAAGCAACAGGATTGGCTAAGGGTTCGGCAAGAAGTATTCCAAAATTTAATATGTATCAA
AATTTGTTCCAATGTAAAGAACTTTTGCCGCATTTTGGCGGACACCCGATGGCTGCCGGGCTGACTATGAAAATCTCAGA
TGTTCCGGAATTAAGGGAACGGTTGAACCGGTTGGCAAGTGAACAATTAGATGAAGAGGATTTTATCCCGGTTACTGAAG
TCGATGGGATGATTCCATTAGAGGATATCCATTTGCAATCTGTGAAAGAATTGCTTCAGTTTGCCCCATTTGGAACAGAA
AATCCTAAACCATTGCTTTTAATAAATGATATTCAATTGCCACAAATCAAAAAAGTCGGTGCAGAGAAAAATCATCTGAA
AGTAATCATTGAAAACCATTCGGCTCAACTTGATTGTATCGGTTTTCATATGGGGGATCTTGCCGATGAAATATCACCAT
TATCGAAAGCTTCGGTCATTGGAGAGTTAGCGATTAATGAATGGAATCATGTCAGTAAACCGCAGTTCATATTAAAAGAT
ATTTGTATTGATGAATGGCAATTGTTTGATTATCGCGGTAACCGAAGAATCGACCAGTGGATTCATCAAGTACCGGAAAA
AAGCAGTAAACTGATTGTTTTTCGCGAATCCACCGTCAACCAAATGAATTTATCCGAATTCGCTGCCGGTCTTGAAATCA
TCCATTCTGAAGCCTCAGCGAAAAATTGTGATATCGACGGAATGAACATTGTTCTAATTGATTTACCCCAATCAAAAAAA
CAATTAGAGTCATTATTGGCAGGAAAGCAGGTTGCAAGAATTTATGCCCATTTTTATCAAGACGATATCGAACTCTTAAA
TACGATGCCGACAAGAGAACATTTTAAATGGATGTATGCATTCTTGTGTAAAAAAGGTGTGTTTGATTTCCGGCGTTATG
GAGCCGAATTGGCGAAATATAAAGGATGGTCACTTCATACCATAAAATTTATGCTAACGGTGTTTTTTGAACTGAATTTT
GTTACAATGGATAATGGTATTCTTTCAGTTATAAAAAATCCGTCAAAACGAGATTTATCAGAATCGAAAACTTACCAATT
AAGACAGGAAATTATTCAATTGGAAAAAGAGTTGCTCTTTTCATCCTATAAACAATTAAAAAATAGTCTCGATAGATTTA
TCGGTACTGCAAATATGAAGGAGGCAAAGGCATGGATTTAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

RecJ OB domain (RecJ_OB)

(454-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)

DHHA1 domain (DHHA1)

(308-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.742

98.601

0.51

Multiple sequence alignment