Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST61_RS12925 Genome accession   NZ_CP163266
Coordinates   2597584..2599980 (-) Length   798 a.a.
NCBI ID   WP_368974216.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2592584..2604980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST61_RS12905 (NST61_12905) - 2592678..2592947 (-) 270 WP_034771279.1 IreB family regulatory phosphoprotein -
  NST61_RS12910 (NST61_12910) alaS 2593171..2595801 (-) 2631 WP_216407749.1 alanine--tRNA ligase -
  NST61_RS12915 (NST61_12915) - 2596174..2597241 (-) 1068 WP_108898331.1 AI-2E family transporter -
  NST61_RS12920 (NST61_12920) - 2597287..2597481 (-) 195 WP_034771285.1 hypothetical protein -
  NST61_RS12925 (NST61_12925) recD2 2597584..2599980 (-) 2397 WP_368974216.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST61_RS12930 (NST61_12930) mnmA 2600266..2601390 (-) 1125 WP_270577786.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST61_RS12935 (NST61_12935) - 2601402..2602547 (-) 1146 WP_108898334.1 cysteine desulfurase family protein -
  NST61_RS12940 (NST61_12940) - 2602614..2603036 (-) 423 WP_328167035.1 Rrf2 family transcriptional regulator -
  NST61_RS12945 (NST61_12945) - 2603175..2603825 (-) 651 WP_368974217.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90611.71 Da        Isoelectric Point: 5.3009

>NTDB_id=1029197 NST61_RS12925 WP_368974216.1 2597584..2599980(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-2771]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KNLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEQTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPTVKKLLESNQPVEIFPEEIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRKQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNLLLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGNHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1029197 NST61_RS12925 WP_368974216.1 2597584..2599980(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-2771]
ATGCAACAAGAAGAACGTTATATTAAGGGGCGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTAAACAAAGATGCGGTTGTCACCGGTTATTTCCCCCGTCTGTATG
AAGAAGAAACATATATTTTTTACGGAAAGTTTACGGATCATCCAAAATATGGCCCACAATTTCAAGTTGACCATTTTCGA
AAAAATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
CGAAAATATTGTCGACGTGCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGGTTCGGTCCGCAGCTGTCTATGCGAATCTATCAAACATATAAAGAGCAAACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTTGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGACTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGAAAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCGGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCGTCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGAGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGCTGGAATGG
AACCGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTTATTTTGGTCGGTGATGAAGATCAATTACCA
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAAGCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAGCTGAATTTACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGTAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATATTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAAATCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

AAA domain (AAA_30)

(336-543)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.665

99.373

0.613

Multiple sequence alignment