Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STACADC2_RS03540 Genome accession   NZ_LT604076
Coordinates   658151..658444 (+) Length   97 a.a.
NCBI ID   WP_087009817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 653151..663444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS03525 (STACADC2_0644) - 653694..656372 (+) 2679 WP_087009815.1 DUF4062 domain-containing protein -
  STACADC2_RS03530 (STACADC2_0645) - 656365..657633 (+) 1269 WP_157659032.1 restriction endonuclease subunit S -
  STACADC2_RS03535 (STACADC2_0646) - 657797..658161 (+) 365 Protein_635 type II toxin-antitoxin system RelE/ParE family toxin -
  STACADC2_RS03540 (STACADC2_0647) HI0659 658151..658444 (+) 294 WP_087009817.1 helix-turn-helix domain-containing protein Machinery gene
  STACADC2_RS03545 (STACADC2_0648) - 658466..660067 (+) 1602 WP_087009818.1 type I restriction-modification system subunit M -
  STACADC2_RS09910 - 660185..660565 (+) 381 Protein_638 PD-(D/E)XK nuclease family transposase -
  STACADC2_RS03550 (STACADC2_0650) - 660660..661664 (+) 1005 WP_087009819.1 DNA/RNA non-specific endonuclease -
  STACADC2_RS03555 (STACADC2_0651) - 661815..662375 (+) 561 WP_087009820.1 LemA family protein -
  STACADC2_RS03560 (STACADC2_0652) htpX 662377..663276 (+) 900 WP_087009821.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.49 Da        Isoelectric Point: 5.8962

>NTDB_id=1029151 STACADC2_RS03540 WP_087009817.1 658151..658444(+) (HI0659) [Streptococcus thermophilus strain ACA-DC]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1029151 STACADC2_RS03540 WP_087009817.1 658151..658444(+) (HI0659) [Streptococcus thermophilus strain ACA-DC]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACAGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment