Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BN8422_RS06570 Genome accession   NZ_LT598688
Coordinates   1279664..1280437 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate Sa_Newman_UoM     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274664..1285437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN8422_RS06550 trmFO 1275008..1276315 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  BN8422_RS06555 xerC 1276732..1277628 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  BN8422_RS06560 hslV 1277625..1278170 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  BN8422_RS06565 hslU 1278236..1279639 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  BN8422_RS06570 codY 1279664..1280437 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BN8422_RS06575 - 1280488..1280580 (+) 93 WP_001790530.1 hypothetical protein -
  BN8422_RS06580 rpsB 1280779..1281546 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  BN8422_RS06585 - 1281580..1281693 (+) 114 WP_001789890.1 hypothetical protein -
  BN8422_RS06590 tsf 1281728..1282609 (+) 882 WP_000201387.1 translation elongation factor Ts -
  BN8422_RS06595 pyrH 1282746..1283468 (+) 723 WP_000057329.1 UMP kinase -
  BN8422_RS06600 frr 1283487..1284041 (+) 555 WP_001280006.1 ribosome recycling factor -
  BN8422_RS06605 - 1284414..1285184 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1028796 BN8422_RS06570 WP_000055337.1 1279664..1280437(+) (codY) [Staphylococcus aureus isolate Sa_Newman_UoM]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1028796 BN8422_RS06570 WP_000055337.1 1279664..1280437(+) (codY) [Staphylococcus aureus isolate Sa_Newman_UoM]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428