Detailed information NTG1028547

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4O90_RS20925
• Genome accession: NZ_CP163033
• Coordinates: 4248910..4249710 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain W162
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4243910..4254710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4O90_RS20890 (AB4O90_20890)	gspH	4244066..4244581 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AB4O90_RS20895 (AB4O90_20895)	gspI	4244578..4244943 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB4O90_RS20900 (AB4O90_20900)	gspJ	4244940..4245536 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
AB4O90_RS20905 (AB4O90_20905)	gspK	4245533..4246519 (+)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
AB4O90_RS20910 (AB4O90_20910)	gspL	4246506..4247699 (+)	1194	WP_040222408.1	type II secretion system protein GspL	-
AB4O90_RS20915 (AB4O90_20915)	-	4247692..4248177 (+)	486	WP_004151943.1	type II secretion system protein M	-
AB4O90_RS20920 (AB4O90_20920)	-	4248167..4248913 (+)	747	WP_368951306.1	type II secretion system protein N	-
AB4O90_RS20925 (AB4O90_20925)	pilD	4248910..4249710 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AB4O90_RS20930 (AB4O90_20930)	hrpB	4249758..4252187 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
AB4O90_RS20935 (AB4O90_20935)	thpR	4252260..4252796 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4O90_RS20940 (AB4O90_20940)	sfsA	4252796..4253512 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB4O90_RS20945 (AB4O90_20945)	dksA	4253675..4254130 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1028547 AB4O90_RS20925 WP_004145898.1 4248910..4249710(+) (pilD) [Klebsiella pneumoniae strain W162]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1028547 AB4O90_RS20925 WP_004145898.1 4248910..4249710(+) (pilD) [Klebsiella pneumoniae strain W162]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCTCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425